| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,973,417 – 6,973,537 |
| Length | 120 |
| Max. P | 0.784827 |
| Location | 6,973,417 – 6,973,537 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.67 |
| Mean single sequence MFE | -37.21 |
| Consensus MFE | -25.48 |
| Energy contribution | -26.84 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.03 |
| Mean z-score | -3.03 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.784827 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6973417 120 - 23771897 ACUUGGGGAAGAUCAAUGGAAGUGACCAAAUGGGCAGACAAUGAUUGGUCAUUCGAGAUGGCAUUGACAUUGGCCAGUCAUUGUCCAAUCCAAUAAUGGCACAAAGCAGGAGCCACAAAG ..(((.((....((.......(((.(((..((((..(((((((((((((((.((((.......))))...)))))))))))))))...))))....)))))).......)).)).))).. ( -37.54) >DroSec_CAF1 43373 120 - 1 ACUUGCGGAAGAUCAAUGGAUGUGACCAAAUGGUCAGACAAUGAUCGGUCAUUUGUGAUGGCAUUGACAUUGGCCAGUCAUUGUCCAAUCCAAUAAUGGCACAAAGCAGGAGCCACAAAG .(((((......(((.(((((.(((((....)))))(((((((((.(((((..(((.(......).))).))))).)))))))))..)))))....)))......))))).......... ( -39.50) >DroSim_CAF1 43137 120 - 1 ACUUGCGGAAGAUCAAUGAAAGUGACCAAAUGGUCAGACAAUGAUUGGUCAUUUGAGAUGGCAUUGACAUUGGCCAGUCAUUGUCCAAUCCAAUAAUGGCACAAAGCAGGAGCCACAAAG ......(((.............(((((....)))))(((((((((((((((.(..(.......)..)...)))))))))))))))...))).....((((.(......)..))))..... ( -37.20) >DroEre_CAF1 43327 120 - 1 ACUUGGGAGUGAUCAAUGGAACUGGCGAAAUGGGCAGACAAUGAUUGGUCAUUCGAGAUGGCAUUGACAUUGGCCAGUCAUUGUCCAAUCCCAUAAAGGCACAAAGCAGGAGCCACAAAG .((...((....))...))...((((...(((((..(((((((((((((((.((((.......))))...)))))))))))))))....)))))....((.....))....))))..... ( -40.30) >DroYak_CAF1 44681 109 - 1 ACUUGGGGAAGAUCAAUGGAAC------AAU-----GACAAUGAUUGGUCAUUUGAGAUGGCAUUGACAUUGGCCAGUCAUUGUCCAAUCCAAUAAUGCCACAAAGCAGGAGCCACAAAG ..(((.((....((..((((..------...-----(((((((((((((((.(..(.......)..)...)))))))))))))))...))))....(((......))).)).)).))).. ( -31.50) >consensus ACUUGGGGAAGAUCAAUGGAAGUGACCAAAUGGGCAGACAAUGAUUGGUCAUUUGAGAUGGCAUUGACAUUGGCCAGUCAUUGUCCAAUCCAAUAAUGGCACAAAGCAGGAGCCACAAAG ..(((.((....((..((((..((.((....)).))(((((((((((((((.((((.......))))...)))))))))))))))...))))......((.....))..)).)).))).. (-25.48 = -26.84 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:06 2006