Locus 247

Sequence ID 3L_DroMel_CAF1
Location 675,669 – 675,775
Length 106
Max. P 0.849613
window370

overview

Window 0

Location 675,669 – 675,775
Length 106
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 75.78
Mean single sequence MFE -41.43
Consensus MFE -27.50
Energy contribution -26.62
Covariance contribution -0.89
Combinations/Pair 1.53
Mean z-score -1.46
Structure conservation index 0.66
SVM decision value 0.78
SVM RNA-class probability 0.849613
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 675669 106 + 23771897
UUAACAUCAUGGUAUUCAGAGUGCGAGAAGCUCUUCCCAGCUCGGCAUUGGUUUCUCGAAGUCGAGCCCUGGCUCCCUGUAGAGUUUCCCUUUGGUGGUGCAGAUC----
....(((((.((.((((.((.(.(((((((((..(.((.....)).)..))))))))).).))((((....))))......))))...))..))))).........---- ( -31.20)
>DroPse_CAF1 37576 106 + 1
UCAGCACCAUGGUGUUCAAGGUGCGGGAGGCACGGCCGAGAUCGGCGUUUGUUUCCCUCAGACGUGCCCGGGCACCUUGCAAGGUCUCGCGCUGAUGGUGCAGGUC----
...((((((((((((.((((((((..(.(((((.((((....))))(((((.......)))))))))))..)))))))).........))))).))))))).....---- ( -49.90)
>DroEre_CAF1 32833 106 + 1
UCAGCAUCAUGGUAUUCAGGGUGCGGGAAGCUCGGCCCAGCUCGGCGUUGGUUUCUCGAAGUCGUGCCCUGGCUCCCUGUAGAGUUUCCCUUUGGUGAUGCAGAUC----
...(((((((((...((((((..((((((((.((((((.....)).)))))))))))(....))..))))))..))...(((((.....)))))))))))).....---- ( -40.80)
>DroMoj_CAF1 40108 110 + 1
GCAGCAUCAUCGAAUUAAGGGUUCGGGAGGCGCGUCCUAAAUCGGCAUUCGUUUCCCUUAGACGAGCGCGUGCGCCCUGCAACGUCUCGCGUUGAUGAUGUAAAUCUAUC
...((((((((((...........((((((((.((((......)).)).))))))))...(.((((.((((((.....)).))))))))).))))))))))......... ( -37.90)
>DroAna_CAF1 32619 106 + 1
UCAACAUCAUAGUGUUAAGGGUGCGGGACGCUCUUCCAAGCUCCGCAUUGGUUUCUCUUAGCCGAGCUCUAGCUCCCUGGAGUGUCUCCCGCUGGUGAUGCAGGUC----
...........((((((..((((.((((((((((....((((..((.((((((......))))))))...))))....)))))))))).))))..)))))).....---- ( -38.90)
>DroPer_CAF1 42004 106 + 1
UCAGCACCAUGGUGUUCAAGGUGCGGGAGGCACGGCCGAGAUCGGCGUUUGUUUCCCUCAGACGUGCCCGGGCACCUUGCAAGGUCUCGCGCUGAUGGUGCAGGUC----
...((((((((((((.((((((((..(.(((((.((((....))))(((((.......)))))))))))..)))))))).........))))).))))))).....---- ( -49.90)
>consensus
UCAGCAUCAUGGUAUUCAGGGUGCGGGAGGCUCGGCCCAGAUCGGCAUUGGUUUCCCUAAGACGAGCCCGGGCUCCCUGCAAAGUCUCCCGCUGAUGAUGCAGAUC____
...(((((((......((((....((((((((...((......))....))))))))......((((....))))))))(((((.....))))))))))))......... (-27.50 = -26.62 +  -0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:24 2006