Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,970,789 – 6,970,904 |
Length | 115 |
Max. P | 0.921568 |
Location | 6,970,789 – 6,970,904 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.88 |
Mean single sequence MFE | -37.94 |
Consensus MFE | -31.14 |
Energy contribution | -32.02 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.03 |
Mean z-score | -1.80 |
Structure conservation index | 0.82 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921568 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6970789 115 + 23771897 UACAGGGGCGUAAAGGACCAGUUGGUCC-----GAUGCACGGUCAGUUGGCCAUUAAACAGAUUACAUGUUUGGCCACUGAUUCACUGCCACUAAGAGGCGCUUAAACCCGGCGACAACA ....(((((((...(((((....)))))-----.))))..(((((((.(((((...((((.......))))))))))))))))....(((.......))).......)))(....).... ( -40.90) >DroSec_CAF1 39744 103 + 1 UACAG----------GACCA--UGGUCC-----GAUGCACGGUCAGUUGGCCAUUAAACAGAUUACAUGUUUGGCCACUGAUUCACUGCCACUAAGAGGCGCUUAAACCCGGCGACAACA ....(----------(((..--..))))-----(.(((.((((((((.(((((...((((.......))))))))))))))......(((.......)))........)))))).).... ( -34.00) >DroSim_CAF1 40513 115 + 1 UACAGGGGCGUAAAGGACCAGUUGGUAC-----GAUGCACGGCCAGUUGGCCAUUAAACAGAUUACAUGUUUGGCCACUGAUUCACUGCCACUAAGAGGCGCUUAAACCCGGCGACAACA ....(((((((...(.(((....))).)-----.))))..(((((((.(((((...((((.......))))))))))))).......(((.......))))))....)))(....).... ( -33.60) >DroEre_CAF1 40743 115 + 1 UACAGGGGCGUGAAGGACCAGUUGGUCC-----GCUGCACGGUCAGUUGGCCAUUAAACAGAUUACAUGUUUGGCCACUGAUUCACUGCCACUAAGAGGCGCUUAAGCCCGGCGACAACA .....((((((((.(((((....)))))-----........((((((.(((((...((((.......))))))))))))))))))).(((.......)))......))))(....).... ( -43.50) >DroYak_CAF1 41829 120 + 1 GACAGGGGCGUGAAGGACCAGUUGGUUCAGUUGGAUGCACGGUCAGUUGGCCAUUAAACAGAUUACAUGUUUGGCCACUGAUUCACUGCCACUAAGAGGCGCUUAAACCCGGCGACAACA ..............(((((....))))).((((..(((.((((((((.(((((...((((.......))))))))))))))......(((.......)))........)))))).)))). ( -37.70) >consensus UACAGGGGCGUAAAGGACCAGUUGGUCC_____GAUGCACGGUCAGUUGGCCAUUAAACAGAUUACAUGUUUGGCCACUGAUUCACUGCCACUAAGAGGCGCUUAAACCCGGCGACAACA ....(((.......(((((....)))))........((..(((((((.(((((...((((.......))))))))))))))))....(((.......))))).....)))(....).... (-31.14 = -32.02 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:59 2006