| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,961,834 – 6,961,925 |
| Length | 91 |
| Max. P | 0.500000 |
| Location | 6,961,834 – 6,961,925 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 79.96 |
| Mean single sequence MFE | -30.35 |
| Consensus MFE | -15.51 |
| Energy contribution | -16.20 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.51 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6961834 91 + 23771897 AAGAGAAGCUGUUGACCCAGUUAAGAUGCGCCUGAUGCAUCUGCUCACUGGUUGGGUGGGUGGGUGGUCAAAGGCAUUGCAUUUCUUGCUC ..(((((((((......)))))..((((((((((((.((((..((((((.....))))))..)))))))..))))...))))))))).... ( -31.30) >DroSec_CAF1 31345 82 + 1 AAGAGAAGCUGCUGACCCAGUUAAGAUGCGCCUGACGCAUCUGCUCAAUGG--------GUGGGUGGCC-AAUGCAUUGCAUUUCUGGCUC .(((((.((..((.(((((....(((((((.....)))))))......)))--------)).))..)).-..(((...))))))))..... ( -31.60) >DroSim_CAF1 32369 82 + 1 AAGAGAAGCUGUUGACCCAGUUAGGAUGCUCCUGACGCAUCUGCUCACUGG--------GUGGGUGGCC-AAUGCAUUGCAUUUCUGGCUC .(((((.((..((.(((((((..((((((.......))))))....)))))--------)).))..)).-..(((...))))))))..... ( -30.00) >DroEre_CAF1 31678 71 + 1 AGGAUAAGCUGUUGGCCCAGUUAGGAUGCGCAUGACGCAUCUGCUCACU------------GGGUGGUC-G-----GUGCAUU--UUGCUC (((((..((((.(.(((((((..(((((((.....)))))))....)))------------)))).).)-)-----))..)))--)).... ( -28.50) >consensus AAGAGAAGCUGUUGACCCAGUUAAGAUGCGCCUGACGCAUCUGCUCACUGG________GUGGGUGGCC_AAUGCAUUGCAUUUCUGGCUC .......((..((.(((((((..(((((((.....)))))))....)))))........)).))..))..........((.......)).. (-15.51 = -16.20 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:50 2006