Locus 2461

Sequence ID 3L_DroMel_CAF1
Location 6,959,974 – 6,960,085
Length 111
Max. P 0.640800
window3793

overview

Window 3

Location 6,959,974 – 6,960,085
Length 111
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 86.18
Mean single sequence MFE -30.16
Consensus MFE -23.15
Energy contribution -23.48
Covariance contribution 0.33
Combinations/Pair 1.07
Mean z-score -2.38
Structure conservation index 0.77
SVM decision value 0.22
SVM RNA-class probability 0.640800
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6959974 111 + 23771897
UU-UG-UCUUAAUU-UUUGU-ACAU--UUGGCGCAAUUAUUGCGCACCAAAUGGAUCGCCAGUCUAUAAAUUGUUCGAUUUUAUUGCGCCAGCUUCGACAGUUGAAUGGCGCAAAA---G
..-..-........-.....-.(((--((((((((.....)))))..))))))(((((.((((......))))..)))))...((((((((..(((((...)))))))))))))..---. ( -30.20)
>DroVir_CAF1 28544 110 + 1
UU-CU-UCUUAAUU-UCUGUUAAAU--UUGGCGCAAUUAUUGCGCACCAAAUGGAACGCAAGUCUAUAAAUUGUUCAAUUUUAUUGCGCCAGCUUCGACAGCUGAAUGGCGCAG-----G
..-..-........-.((((..((.--((((((((((.((((.(((....(((((.(....))))))....))).))))...)))))))))).))..))))(((.......)))-----. ( -32.80)
>DroGri_CAF1 27807 117 + 1
UU-UU-CCUUAAUU-UCUGUUAAAUUUUUGGCGCAAUUAUUGCGCACCAAAUGGAUCGCAAGUCUAUAAAUUGUUCAAUUUUAUUGCGCCAGCUUCGACAGCUGAAUGGCGCACAGCAAA
..-..-........-..(((..((...((((((((((.((((.(((....(((((.(....))))))....))).))))...)))))))))).))..)))((((.........))))... ( -31.30)
>DroWil_CAF1 40129 112 + 1
UG-UGUUCUUAAUU-UUUGU-ACAU--UUGGCGCAAUUAUUGCGCACCAAAUGGAUCGCAAGUCUAUAAAUUGUUCGAUUUUAUUGCGCCAGCUUCGACAGUUGAAUGGCAUAGAA---G
((-((((.((((((-.(((.-....--((((((((((.((((.(((....(((((.(....))))))....))).))))...))))))))))...))).))))))..))))))...---. ( -31.80)
>DroMoj_CAF1 27828 106 + 1
UUCUU-UCUUAAUUUUCGGUUCAAU--UUGGCGCAAUUAUUGCGCACCGAAU--------AGUCUAUAAAUUGUUCAAUUUUAUUGCGCCAGCUUCGACAGCUGAAUGCCGCAC---CAA
.....-..........(((((((..--.(((((((((.((((.(((......--------...........))).))))...)))))))))(((.....))))))..))))...---... ( -23.83)
>DroAna_CAF1 27137 113 + 1
UU-UU-UCUUAAUU-UUUGU-ACAU--UUGGCGCAAUUAUUGCGCACCAAAUGGAUCGCAAGUCUAUAAAUUGUUCGAUUUUAUUGCGCCAGCUUCGACAGUUGAAUGGCGCAAAGCG-G
..-..-.......(-(((((-.(((--((((((((((.((((.(((....(((((.(....))))))....))).))))...))))))))((((.....)))))))))..))))))..-. ( -31.00)
>consensus
UU_UU_UCUUAAUU_UCUGU_AAAU__UUGGCGCAAUUAUUGCGCACCAAAUGGAUCGCAAGUCUAUAAAUUGUUCAAUUUUAUUGCGCCAGCUUCGACAGCUGAAUGGCGCAAA____G
................((((.......((((((((((.((((.(((....(((((.(....))))))....))).))))...)))))))))).....))))................... (-23.15 = -23.48 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:49 2006