Locus 2460

Sequence ID 3L_DroMel_CAF1
Location 6,957,885 – 6,957,993
Length 108
Max. P 0.832188
window3792

overview

Window 2

Location 6,957,885 – 6,957,993
Length 108
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 78.47
Mean single sequence MFE -37.57
Consensus MFE -17.19
Energy contribution -16.75
Covariance contribution -0.44
Combinations/Pair 1.48
Mean z-score -2.46
Structure conservation index 0.46
SVM decision value 0.72
SVM RNA-class probability 0.832188
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6957885 108 - 23771897
AUCCUUCGCCAUCAAACGGCGGUGGAAAAUGAGAAAGGACUCUUUGGCAAACUGCUGGGAAAGUGCCAGUCCUUUGGCAAGGAUGAAAAG---GAUCUUGGCCAGCAGGAG
.(((.(((((.......))))).)))...((..((((....))))..))..(((((((.....((((((....))))))(((((......---.)))))..)))))))... ( -36.30)
>DroSec_CAF1 27456 108 - 1
AUCCUGCGCCAUCAAACGGCGGUGGAAAAUGAGAAAGGACUCUUUGGCAAGCUGCUGGGAAAGUGUCAGUCCUUCGGCAAGGAGGAAAAG---GAUCUUGGCCAGCAGGAG
.(((((((((.((...(((((((.......((((......))))......))))))).))(((.(((..((((((.....))))))....---)))))))))..)))))). ( -39.02)
>DroSim_CAF1 28479 108 - 1
AUCCUGCGCCAUCAAACGGCGGUGGAAAAUGAGAAAGGACUCUUUGGCAAGCUGCUGGGAAAGUGCCAGUCCUUCGGCAAGGAGGAAAAG---GAGCUUGGCCAGCAGGAG
.(((((((((.((...(((((((.......((((......))))......))))))).))((((.((..((((((.....))))))...)---).)))))))..)))))). ( -41.82)
>DroEre_CAF1 27856 105 - 1
AUCCUUCGCCGUCAAACAGCGGUGGACAAUGAACAAGGACUCUUCGGCAAGCUGCUGGAAAAGUGCCAGUCCUUCGGCAAGGCGGAGAAG---GAGGCUGACC---AGGAG
.((((((.(((((...(((((((......((((.........))))....)))))))......((((........)))).))))).))))---))((....))---..... ( -35.90)
>DroYak_CAF1 28161 105 - 1
AUCCUGCGCCGCCAAACGGCGGUGGAAAAUGAAAAGGGACUCUUCAGCAAGCUGCUGGAGAAGUGCGAGUCCUUCGGCAAGGAGGAGAAG---CAUGUGGACC---AGGAG
.((((.(((((((....)))))))...........((..(((((((((.....)))))))).((((...((((((.....))))))...)---)))..)..))---)))). ( -46.90)
>DroAna_CAF1 23785 105 - 1
GUCCUUCAUCACCAAACAACCGUGGAGAACGAAGUCGGACUAUUUAGUAAGCUCCUCAACAAGUGCACAUUUCUUGUAAAAAAGGAAAAGUCCGAGG-UGGCC-----GAG
...(((..(((((.......(((.....)))...(((((((.....((..(((........)))..)).((((((......)))))).)))))))))-)))..-----))) ( -25.50)
>consensus
AUCCUGCGCCAUCAAACGGCGGUGGAAAAUGAAAAAGGACUCUUUGGCAAGCUGCUGGAAAAGUGCCAGUCCUUCGGCAAGGAGGAAAAG___GAGCUUGGCC___AGGAG
.(((..((((.......))))..)))..........(.(((.((((((.....))))))..))).)...((((((.....))))))......................... (-17.19 = -16.75 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:48 2006