Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,955,053 – 6,955,156 |
Length | 103 |
Max. P | 0.879114 |
Location | 6,955,053 – 6,955,156 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 81.85 |
Mean single sequence MFE | -37.00 |
Consensus MFE | -29.93 |
Energy contribution | -29.93 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.94 |
Structure conservation index | 0.81 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879114 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6955053 103 + 23771897 UGAGGAUGAGGAUGGGGUCGCAGUGCAAAAGUUUUGCCGCCGCCGGAGGACGUCACAUGUGGCCACCAUCCCCCUCCCCUCCUCAAGAAACACCCCCACCCCC ((((((.((((((((((((((((((.(...(((((.(((....)))))))).)))).))))))).))))))...))...)))))).................. ( -36.90) >DroSec_CAF1 24630 94 + 1 UGAGGAUGGGGAUGGGGUCGCAGUGCAAAAGUUUUGCCGCCGCCGGAGGACGUCACAUGUGGCC-CCAUCCC--------CCUAAAGAAACACCCCCUCCCCC .((((..((((((((((((((((((.(...(((((.(((....)))))))).)))).)))))))-)))))))--------)(....)........)))).... ( -43.10) >DroYak_CAF1 25201 82 + 1 UGCGGAUGAGGAUGGGGUCGCAGUGCAAAAGUUUUGCCGCCGCCGGAGGACGUCACAUGUGGCCCCCAUCCCCC----------AAGAA-----------CCC ...((..(.((((((((((((((((.(...(((((.(((....)))))))).)))).))))).)))))))))))----------.....-----------... ( -31.00) >consensus UGAGGAUGAGGAUGGGGUCGCAGUGCAAAAGUUUUGCCGCCGCCGGAGGACGUCACAUGUGGCC_CCAUCCCCC______CCU_AAGAAACACCCCC_CCCCC .........((((((((((((((((.(...(((((.(((....)))))))).)))).))))))).))))))................................ (-29.93 = -29.93 + 0.00)
Location | 6,955,053 – 6,955,156 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 81.85 |
Mean single sequence MFE | -41.70 |
Consensus MFE | -27.52 |
Energy contribution | -29.97 |
Covariance contribution | 2.45 |
Combinations/Pair | 1.04 |
Mean z-score | -1.83 |
Structure conservation index | 0.66 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608761 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6955053 103 - 23771897 GGGGGUGGGGGUGUUUCUUGAGGAGGGGAGGGGGAUGGUGGCCACAUGUGACGUCCUCCGGCGGCGGCAAAACUUUUGCACUGCGACCCCAUCCUCAUCCUCA ((((((((((((..(((....)))((((.((((((((.(.((.....)).))))))))).((((..((((.....)))).))))..)))))))))))))))). ( -49.40) >DroSec_CAF1 24630 94 - 1 GGGGGAGGGGGUGUUUCUUUAGG--------GGGAUGG-GGCCACAUGUGACGUCCUCCGGCGGCGGCAAAACUUUUGCACUGCGACCCCAUCCCCAUCCUCA .(((((.(((((.........((--------((((((.-.((.....))..)))))))).((((..((((.....)))).)))).))))).)))))....... ( -44.60) >DroYak_CAF1 25201 82 - 1 GGG-----------UUCUU----------GGGGGAUGGGGGCCACAUGUGACGUCCUCCGGCGGCGGCAAAACUUUUGCACUGCGACCCCAUCCUCAUCCGCA (((-----------(....----------.((((((((((...........((((....))))((.((((.....))))...))..))))))))))))))... ( -31.10) >consensus GGGGG_GGGGGUGUUUCUU_AGG______GGGGGAUGG_GGCCACAUGUGACGUCCUCCGGCGGCGGCAAAACUUUUGCACUGCGACCCCAUCCUCAUCCUCA (((((.((((...................((((((((...((.....))..)))))))).((((..((((.....)))).))))..)))).)))))....... (-27.52 = -29.97 + 2.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:47 2006