Locus 2457

Sequence ID 3L_DroMel_CAF1
Location 6,952,058 – 6,952,170
Length 112
Max. P 0.793500
window3787

overview

Window 7

Location 6,952,058 – 6,952,170
Length 112
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 72.71
Mean single sequence MFE -25.28
Consensus MFE -6.71
Energy contribution -6.95
Covariance contribution 0.24
Combinations/Pair 1.24
Mean z-score -1.82
Structure conservation index 0.27
SVM decision value 0.59
SVM RNA-class probability 0.793500
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6952058 112 + 23771897
CUUAUUAUCUUUAAGCCUG----CAAAUACAGUGGUUACUCACAAACAAAUAUAGUGCAAGGUGCGGUGGCUGCUGAUAAGCUCGAUAAAUGUUUUACAGUGUAAAUGAAAACUAC
....(((((.....(....----).....(((..(((((((((..((.......)).....))).))))))..)))........)))))..(((((.((.......)))))))... ( -20.00)
>DroSec_CAF1 21727 95 + 1
CUCAUUAUCUUUCAGCCUG----CAAAUACAGUGGUUACUCGGAAACAAACAUUGUGCAAGGUGCAGUGGGUUCUGAA-----------------UGAAAUGUAAAUGAAAACUAC
.(((((((.((((((((.(----(.......))))))..((((((.(...(((((..(...)..))))).))))))).-----------------.)))).)).)))))....... ( -20.90)
>DroSim_CAF1 22362 95 + 1
CUCACUAUCUUUCAGCCUG----CAAAUACAGUGGUUACUCGGAAACAAACAUUGUGCAAGGUGCAGUGGGUUCUGAA-----------------UGAAAUGUAAAUGAAAACUAC
.(((.(((.((((((((.(----(.......))))))..((((((.(...(((((..(...)..))))).))))))).-----------------.)))).)))..)))....... ( -18.90)
>DroEre_CAF1 22314 110 + 1
CUUAUUAUCUUGCAGCUAGUAACCAAGUACAGUGGUUACUAGCAAAUA-ACACU--GCAAGGUGCAAUGGGUUUUAUG-UGAUAGAUA--UAUUUCACAGAGCAAAUGAAAACUAC
.....((((((((((((((((((((.......))))))))))).....-....)--)))))))).....((((((.((-(((......--....))))).........)))))).. ( -31.00)
>DroYak_CAF1 22213 107 + 1
CUUAUUAUUUUUCAGCUUG----CAAGUACAGUGGUUACUGGCAAACG-GCACUGUGCAAGGUGCAGUGUGU-UUAUA-UGAUAGAUA--UAUUUCACAGUGCAAAUGAAAAAUAC
.....(((((((((..(((----((.((((((((....(((.....))-)))))))))...(((.(((((((-((((.-..)))))))--)))).)))..))))).))))))))). ( -35.60)
>consensus
CUUAUUAUCUUUCAGCCUG____CAAAUACAGUGGUUACUCGCAAACAAACAUUGUGCAAGGUGCAGUGGGUUCUGAA__G_U_GAUA__U_UUUUACAGUGUAAAUGAAAACUAC
.(((((.......((((................)))).............((((((((...))))))))...................................)))))....... ( -6.71 =  -6.95 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:44 2006