Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,947,517 – 6,947,637 |
Length | 120 |
Max. P | 0.713258 |
Location | 6,947,517 – 6,947,637 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.21 |
Mean single sequence MFE | -28.55 |
Consensus MFE | -17.15 |
Energy contribution | -18.18 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.27 |
Mean z-score | -1.88 |
Structure conservation index | 0.60 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713258 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6947517 120 + 23771897 UUCUACACUCUUAUCUUACCUGUGUACUCUGGGAAGCAUAUCGUCAGCGGAGAUCUCUUGAUCUUCUCCUCAAACAGAUCCUUCUUGUUGAGGAACAGUAUUAUGGAUGUUUCCACAAAC ...(((((.............)))))...((((((((((.((((..(((((((((....)))))))(((((((..(((....)))..)))))))...))...)))))))))))).))... ( -35.72) >DroVir_CAF1 16425 118 + 1 AUGU--UGUAUCGUCUUACCAGUGUAUUCCGGAAAGCAUAUCGUAAGGGGAGAUCGCUUGAUUUUCUCCUCGAACAAAUCCUUUUUGUUCAAGAAGAGUAUUAUAGAUGUUUCCACAAAC ...(--(((....((((((..((((.((....)).))))...))))))((((((..((((((.((((.((.(((((((.....))))))).)).)))).)))).))..)))))))))).. ( -28.00) >DroGri_CAF1 16366 114 + 1 UUA----U--UUCAGUUACCUGUGUAUUCCGGAAAGCAUAUCGUUAGGGGAGAUCGCUUGAUUUUCUCCUCGAACAAAUCCUUUUUGUUCAAGAAGAGUAUUAUGGACGUUUCCACAAAC ...----.--........((...((((((.................(((((((...........)))))))(((((((.....))))))).....))))))...)).............. ( -24.20) >DroWil_CAF1 17935 120 + 1 UUUUGCUCUUUACACUUACCUGUGUACUCUGGGAAACAUAUCGUCAGCGGUGAACGUUUGAUUUUCUCUUCAAACAGAUCCUUCUUAUUCAGAAACAAUAUAAUGGAUGUCUCCACAAAC .((((.....(((((......))))).....(((.((.(((((....)))))...((((((........))))))..((((....((((.......))))....)))))).))).)))). ( -22.40) >DroMoj_CAF1 16393 118 + 1 UUCC--AUUGUUGCCUUACCAGUGUAUUCUGGGAAACAUAUCGUUAGGGGAGAUCGUUUAAUCUUCUCCUCAAACAAAUCCUUUUUGUUCAAGAAUAAUAUAAUGGAUGUUUCCACAAAC ....--.((((........(((......)))((((((((.(((((((((((((...........))))))).((((((.....))))))...........)))))))))))))))))).. ( -30.20) >DroAna_CAF1 14985 108 + 1 ------------GUCUUACCUGUGUACUCUGGGAAGCAUAUCGUCAGAGGAGAUCGCUUGAUUUUCUCCUCAAACAGAUCCUUCUUGUUGAGGAAGAGUAUGAUGGAGGUUUCCACAAAC ------------.................((((((((...((((((..(((((((....)))))))(((((((..(((....)))..)))))))......))))))..)))))).))... ( -30.80) >consensus UUCU___CU_UUGUCUUACCUGUGUACUCUGGGAAGCAUAUCGUCAGGGGAGAUCGCUUGAUUUUCUCCUCAAACAAAUCCUUCUUGUUCAAGAAGAGUAUUAUGGAUGUUUCCACAAAC ...............................((((((((.(((((((((((((((....)))))))))((..(((((.......)))))..)).......))))))))))))))...... (-17.15 = -18.18 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:43 2006