Locus 2452

Sequence ID 3L_DroMel_CAF1
Location 6,924,262 – 6,924,374
Length 112
Max. P 0.512033
window3779

overview

Window 9

Location 6,924,262 – 6,924,374
Length 112
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.31
Mean single sequence MFE -36.56
Consensus MFE -24.98
Energy contribution -25.32
Covariance contribution 0.34
Combinations/Pair 1.28
Mean z-score -1.20
Structure conservation index 0.68
SVM decision value -0.04
SVM RNA-class probability 0.512033
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6924262 112 - 23771897
CCCCGUACGCAGUGCCCACGCAGGCGGCACCCUAUAUGAUGGCGAACGGCGGCGACAUCUUUGCCUAUCCGCCGCCUCCGCUGCCUGUGCAGAACUAGA-------GGCCCUG-CGGUUC
.......(((((.(((..((((((((((.(((........)).)...(((((((...............)))))))...))))))))))..........-------))).)))-)).... ( -46.46)
>DroPse_CAF1 204868 120 - 1
CCCAGUAUGCUGUGCCCACACAGGCGGCACCCUACAUGAUGGCCAACAGCGGCGACAUCUACGCCUACCCUCCGCCCCCGUUGCCCGUACAAAACUAAAUCACACAGACAAAGCCAUUUC
....((((((((((((......)))(((...(.....)...))).)))))((((((......((.........))....)))))).)))).............................. ( -25.40)
>DroEre_CAF1 199002 112 - 1
CCCAGUAUGCAGUGCCCACGCAGGCGGCACCCUAUAUGAUGGCGAAUGGGGGCGAUAUCUUUGCCUAUCCGCCGCCCCCACUGCCUGUGCAGAACUAAA-------GGCUCUG-CAGCUC
...(((.(((((.(((......((((((..(((((.((....)).)))))(((((.....))))).....))))))....((((....)))).......-------))).)))-))))). ( -43.60)
>DroYak_CAF1 185291 112 - 1
CCCAGUAUGCAGUGCCCACGCAGGCGGCACCCUAUAUGAUGGCGAAUGGCGGCGAUAUCUUUGCCUAUCCGCCGCCACCACUGCCUGUGCAGAACUAAA-------GGCUCUG-CAGUUC
.......(((((.(((..(((((((((..(((........)).)..(((((((((((........))).))))))))...)))))))))..........-------))).)))-)).... ( -43.30)
>DroAna_CAF1 199862 108 - 1
CCCAGUAUGCAGUGCCGACAACGGCGGCUCCCUACAUGAUGGCCAAUGGCGGUGACAUUUUCGCUUACCCGCCGCCUCCGCUGCCCGUGCAGAACUAGA-------GGCUCCG-U---U-
....(((.(.(((((((....)))).))).).)))..(((((.....(((((((((......).))).)))))(((((..((((....)))).....))-------))).)))-)---)- ( -35.20)
>DroPer_CAF1 200320 120 - 1
CCCAGUAUGCUGUGCCCACACAGGCGGCACCCUACAUGAUGGCCAACAGCGGCGACAUCUACGCCUACCCUCCGCCCCCGUUGCCCGUACAAAACUAAAUCACACAGACAAAGCCAUUUC
....((((((((((((......)))(((...(.....)...))).)))))((((((......((.........))....)))))).)))).............................. ( -25.40)
>consensus
CCCAGUAUGCAGUGCCCACACAGGCGGCACCCUACAUGAUGGCCAACGGCGGCGACAUCUUCGCCUACCCGCCGCCCCCGCUGCCCGUGCAGAACUAAA_______GGCUCUG_CAGUUC
.......(((((.(((......((((((..((........))........(((((.....))))).....))))))....((((....))))..............))).))).)).... (-24.98 = -25.32 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:36 2006