Locus 2451

Sequence ID 3L_DroMel_CAF1
Location 6,922,325 – 6,922,445
Length 120
Max. P 0.870513
window3778

overview

Window 8

Location 6,922,325 – 6,922,445
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.17
Mean single sequence MFE -49.37
Consensus MFE -46.48
Energy contribution -45.70
Covariance contribution -0.78
Combinations/Pair 1.11
Mean z-score -1.14
Structure conservation index 0.94
SVM decision value 0.87
SVM RNA-class probability 0.870513
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6922325 120 - 23771897
AGUUCCUGCGAGAACUGCGUCUCCAGGGUGGGUCUAGUUCUAGUGGGGUUCCUGCUGGGAUUGCGUAUCGGUGGUCCUGGGCUGCCAUAGCCCGCCGCAUACAGCUGCGGGCACGAGUCU
...(((((.((((......))))))))).((.(((((((((((..((...))..))))))))).((...((..((.....))..))...((((((.((.....)).)))))))))).)). ( -51.10)
>DroPse_CAF1 198969 120 - 1
AGUUCCUGCGAGAACUGGGUCUCCAGGGUGGGUCUAGUUCUAGUUGGAUUUCUGCUGGGAUUGCGUAUCGGUGGUCCUGGGCUGCCAUAGCCCGCGGCAUACAGCUGCGGGCACGAGUCU
...(((.((.((((((((..(((....).))..)))))))).)).))).........(((((.(((...((..((.....))..))...(((((((((.....))))))))))))))))) ( -54.60)
>DroGri_CAF1 189587 120 - 1
AGUUCCUGCGAGAACUGCGUCUCCAGGGUGGGUCUAGUUCUAGUUGGAUUCCGGUUGGGAUUGCGUAUCGGUGGUCCGGGGCUGCCAUAGCCCGCCGCAUACAGCUGCGGGCACGAGUCU
...(((((.((((......))))))))).((.(((((((((((..((...))..))))))))).((...((..((.....))..))...((((((.((.....)).)))))))))).)). ( -46.80)
>DroWil_CAF1 319111 120 - 1
AGUUCCUGAGAGAACUGUGUCUCCAGGGUGGGUCUAGUUCUAGUUGGGUUUCUGUUGGGAUUGCGUAUCGGUGGUCCUGGGCUGCCAUAGCCCGCCGCAUAAAGCUGCGGGCACGAGUCU
((..((..(.(((((((.(.(((......))).))))))))..)..))...))....(((((.(((...((..((.....))..))...((((((.((.....)).)))))))))))))) ( -45.00)
>DroAna_CAF1 197799 120 - 1
AGUUCCUGCGAGAACUGCGUCUCCAGGGUGGGUCUAGUUCUAGUGGGGUUCCUGUUGGGGUUGCGUAUCGGUGGUCCUGGGCUGCCAUAGCCCGCCGCAUACAGUUGCGGGCACGAGUCU
...(((((.((((......))))))))).((.(((((..((((..((...))..))))..))).((...((..((.....))..))...((((((.((.....)).)))))))))).)). ( -45.60)
>DroPer_CAF1 197115 120 - 1
AGUUCCUGAGAGAACUGGGUCUCCAGGGUGGGUCUAGUUCUAGUUGGAUUUCUGCUGGGAUUGCGUAUCGGUGGUCCUGGGCUGCCAUAGCCCGCGGCAUACAGCUGCGGGCACGAGUCU
...(((....((((((((..(((....).))..))))))))....))).........(((((.(((...((..((.....))..))...(((((((((.....))))))))))))))))) ( -53.10)
>consensus
AGUUCCUGCGAGAACUGCGUCUCCAGGGUGGGUCUAGUUCUAGUUGGAUUCCUGCUGGGAUUGCGUAUCGGUGGUCCUGGGCUGCCAUAGCCCGCCGCAUACAGCUGCGGGCACGAGUCU
...(((((.((((......))))))))).((.(((((((((((..((...))..))))))))).((...((..((.....))..))...((((((.((.....)).)))))))))).)). (-46.48 = -45.70 +  -0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:35 2006