Locus 2450

Sequence ID 3L_DroMel_CAF1
Location 6,921,360 – 6,921,459
Length 99
Max. P 0.541836
window3777

overview

Window 7

Location 6,921,360 – 6,921,459
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 77.91
Mean single sequence MFE -41.62
Consensus MFE -31.80
Energy contribution -33.56
Covariance contribution 1.76
Combinations/Pair 1.19
Mean z-score -1.19
Structure conservation index 0.76
SVM decision value 0.02
SVM RNA-class probability 0.541836
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6921360 99 - 23771897
GCGCGACUAUCGUCGAUGAGGAGGAGGAGGAGGUGGAGGCGGUGACCGCCGAGGCGCUAGAAGGCUGAAUCAGCAGGCCGGCGCCACGCGGUGGCUGCU
.(((..((.((.((......)).))..))...)))..((((((.(((((.(.(((((..(...((((...))))...)..))))).)))))).)))))) ( -43.70)
>DroSec_CAF1 174937 99 - 1
GCGCGACUAUCGUCGAUGAGGAGGAGGAGGAGGUGGAGGCGGUGACCGCCGAGGCGCUGGAAGGCUGGAGCAGCAGGCCGGCGCCACGCGGCGGCUGCU
.(((..(((((..(..(........)..)..)))))..)))((..((((((.((((((((...((((...))))...))))))))...))))))..)). ( -46.90)
>DroSim_CAF1 176773 99 - 1
GCGCGACUAUCGUCGAUGAGGAGGAGGAGGAGGUGGAGGCGGUGACCGCCGAGGCGCUGGAAGGCUGGAGCAGCAGGCCGGCGCCACGCGGCGGCUGCU
.(((..(((((..(..(........)..)..)))))..)))((..((((((.((((((((...((((...))))...))))))))...))))))..)). ( -46.90)
>DroEre_CAF1 196070 87 - 1
GCGCGACUAUCGUCGAGGAGG------------AGGAGGCGGUGACCGCCGACGCGCUGGAAGGCUGGAGCAGCAGGCCGGCGCCACGUGGUGGCUGCU
.(.((((....)))).)....------------....((((((.(((((....(((((((...((((...))))...)))))))...))))).)))))) ( -40.90)
>DroAna_CAF1 196890 75 - 1
UACUGACCAUCGCGGUUGAG------------------------ACGGCGGCGGCACUGGAGGGUUGGAGCAGCAGGCCAGCGCCACGGGGCGGCUGCU
..((((((.....)))).))------------------------..((((((.((.(((..(.(((((..(....).))))).)..))).)).)))))) ( -29.70)
>consensus
GCGCGACUAUCGUCGAUGAGGAGGAGGAGGAGGUGGAGGCGGUGACCGCCGAGGCGCUGGAAGGCUGGAGCAGCAGGCCGGCGCCACGCGGCGGCUGCU
...((((....))))......................(((((...((((((.((((((((...((((...))))...))))))))...))))))))))) (-31.80 = -33.56 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:34 2006