Locus 245

Sequence ID 3L_DroMel_CAF1
Location 670,995 – 671,092
Length 97
Max. P 0.745139
window366

overview

Window 6

Location 670,995 – 671,092
Length 97
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 80.48
Mean single sequence MFE -21.28
Consensus MFE -16.72
Energy contribution -16.60
Covariance contribution -0.12
Combinations/Pair 1.15
Mean z-score -1.62
Structure conservation index 0.79
SVM decision value 0.46
SVM RNA-class probability 0.745139
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 670995 97 + 23771897
UUCUAGGGAACACUUGAGAAAUCUAGCCUUUAAGUAUAUUAAACGGCUGCACGAGUAGCCAUUUAGAUAAGAUUAAUUGUUAUAGAUAGUGUAGAUA------------
.........(((((.((....))((((..((((.(((.(((((.((((((....)))))).))))))))...))))..)))).....))))).....------------ ( -20.90)
>DroSec_CAF1 27260 88 + 1
UUCUGGGGAACAAUUCAGUAAUCUGGCCUUUAAGUAUAUUAAACGGCUGCACGAGUAGCCACUUAGAUAAGAUUAAUUGUUAUAGA---------UA------------
.((((...((((((....((((((....(((((((.........((((((....)))))))))))))..)))))))))))).))))---------..------------ ( -22.30)
>DroSim_CAF1 26899 88 + 1
UUCUGGGGAACACUUGAGUAAUCUGGCCUUUAAGUAUAUUAAACGGCUGCACGAGUAGCCACUUAGAUAAGAUUAAUUGUUAUAGA---------UA------------
.((((...((((......((((((....(((((((.........((((((....)))))))))))))..))))))..)))).))))---------..------------ ( -20.30)
>DroEre_CAF1 27901 102 + 1
UUCUUUGGAAUACUUGAGUAAUCUAGCCUUUAAGU-------ACGGCUGCCCAAGUAGCCACUUAGAUAAGAUUAAUUGUUAAAGAUAUUGUAGAUAGUUGAUUGUAGA
....(((((.(((....))).)))))..(((((((-------..((((((....)))))))))))))...(((((((((((............)))))))))))..... ( -22.80)
>DroYak_CAF1 28304 97 + 1
UUCUAUGGAACACUUGAGUAAUCUAGCCUUUAAGUAAAUUAAACGGCUGCACGAGUAGCCACUUAGAUAAGAUUAAUUGAUGAAGAUAUUGUAGAUA------------
.((((..(....(((.(.((((((....(((((((.........((((((....)))))))))))))..)))))).....).)))...)..))))..------------ ( -20.10)
>consensus
UUCUAGGGAACACUUGAGUAAUCUAGCCUUUAAGUAUAUUAAACGGCUGCACGAGUAGCCACUUAGAUAAGAUUAAUUGUUAUAGAUA_UGUAGAUA____________
.((((...((((.((((...((((((.......((.......))((((((....))))))..))))))....)))).)))).))))....................... (-16.72 = -16.60 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:20 2006