Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,914,333 – 6,914,441 |
Length | 108 |
Max. P | 0.654263 |
Location | 6,914,333 – 6,914,441 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 80.32 |
Mean single sequence MFE | -30.96 |
Consensus MFE | -18.06 |
Energy contribution | -18.06 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.89 |
Structure conservation index | 0.58 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654263 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6914333 108 + 23771897 CCCCCGG----AAUCGAGGGCUUAGCCUUUGUUGUUGACGAUGGCGAUGGUGAUGGCGAUUGUGUGCGGCGAUAAUAAUUACACGUCACGCUGCCACGCAAUC-AAAACAUUA .(((((.----...)).)))....(((.(..(..(((.(....))))..)..).)))((((((((((((((.................))))).)))))))))-......... ( -35.23) >DroPse_CAF1 191656 94 + 1 UCCCUGGCCAACACCCGGGCCUUAGUCUUUGUUGUUGU------------------CGAUUGUGUGCGGCGAUAAUAAUUACACGUCACGCUGCCACGCAAUC-AAAACAUUA .....((((........))))...........((((..------------------.((((((((((((((.................))))).)))))))))-..))))... ( -28.23) >DroSec_CAF1 167622 102 + 1 CCCCCGG----AAUCAAGGGCUUAGCCUUUGUUGUUGGCGGUGGCG------AUGGCGAUUGUGUGCGGCGAUAAUAAUUACACGUCACGCUGCCACGCAAUC-AAAACAUUA .((((((----...(((((((...)))))))...)))).))..((.------...))((((((((((((((.................))))).)))))))))-......... ( -35.43) >DroEre_CAF1 182246 102 + 1 GCCACGG----AAUCGAGGGCUUAGCCUUUGUUGUUGGCGAUGGUG------AUGGCGAUUGUGUGCGGCGAUAAUAAUUACACGUCACGCUGCCACGCAAUC-AAAACAUUA ((((((.----.(((((((((...))))))((.....)))))..))------.))))((((((((((((((.................))))).)))))))))-......... ( -34.53) >DroAna_CAF1 190351 85 + 1 CCCUCGC----AUCC-----UUGAGCCUUUGUUGUUGG------------------CGAUUGUGUGCGGCGAUAAUAAUUACACGUCACGCUGCCACGCAAUC-AAAACAUUA .......----....-----....(((.........))------------------)((((((((((((((.................))))).)))))))))-......... ( -23.83) >DroPer_CAF1 189743 95 + 1 UCCCUGGCCAACACCCGGGCCUUAGUCUUUGUUGUUGU------------------CGAUUGUGUGCGGCGAUAAUAAUUACACGUCACGCUGCCACGCAAUCCAAAACAUUA .....((((........))))...........((((..------------------.((((((((((((((.................))))).)))))))))...))))... ( -28.53) >consensus CCCCCGG____AACCCAGGGCUUAGCCUUUGUUGUUGG__________________CGAUUGUGUGCGGCGAUAAUAAUUACACGUCACGCUGCCACGCAAUC_AAAACAUUA .........................................................((((((((((((((.................))))).))))))))).......... (-18.06 = -18.06 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:31 2006