| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,911,333 – 6,911,430 |
| Length | 97 |
| Max. P | 0.692001 |
| Location | 6,911,333 – 6,911,430 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 81.37 |
| Mean single sequence MFE | -20.89 |
| Consensus MFE | -12.44 |
| Energy contribution | -13.36 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.692001 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6911333 97 - 23771897 AAC-------CAUACUGCUUAUAUGGUAGAGUAUAAAGAGCGCACCUCUGCCCCACUGGGAACGUGGAUAUCCACUCCUCCAACU------CCAGCUCCAACUCCAUCUC .((-------((((.......)))))).((((.....(((((((....))).....((((...((((....))))...))))...------...))))..))))...... ( -23.10) >DroSec_CAF1 164662 103 - 1 AAC-------CAUACUGCUUAUAUGGUAGAGUAGAAAGAGCGCACCUCUGCCCCACUGGGAACGUGGAUAUCCAUUCCUCCAACUUCAACUCCAACUUCAACUCCAUCUC .((-------((((.......)))))).((((.(((((((.....)))).......((((...((((....))))...))))..))).)))).................. ( -19.80) >DroSim_CAF1 166200 103 - 1 AAC-------CAUACUGCUUAUAUGGUAGAGUAGAAAGAGCGCACCUCUGCCCCUCUGGGAACGUGGAUAUCCACUCCUCCAACUACAACUCCAACUUCAACUCCAGCUC .((-------((((.......)))))).((((.(((((((.(((....)))..)))).(((..((((....))))...)))...............))).))))...... ( -23.60) >DroEre_CAF1 178603 107 - 1 AAGAAAACUUCCGACUGA---UAUGGUAGAGUAGAACCCGCUCAGCUCUGCCCCACUGGGAACAAGCAUAUCCACUCCUCCAACUCCAACUGCAACUCCAACUCCAUCUC .(((....((((.(.((.---...((((((((.((......)).)))))))).)).).))))...(((......................))).............))). ( -17.85) >DroYak_CAF1 172075 110 - 1 AGGAAAACCUCAGACUGUUUACUUGGUAGAGUAGACACCGCUCACCUCUGCCCCACUGGAAACGAGCAUAUCCACUCCUCCAACUCCAACUGCAACUCCAACUCCAUCUC .(((......(((...........(((((((..((......))..)))))))....((((...(((........))).)))).......)))....)))........... ( -20.10) >consensus AAC_______CAUACUGCUUAUAUGGUAGAGUAGAAAGAGCGCACCUCUGCCCCACUGGGAACGUGGAUAUCCACUCCUCCAACUCCAACUCCAACUCCAACUCCAUCUC ........................(((((((..(........)..)))))))....((((...((((....))))...))))............................ (-12.44 = -13.36 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:28 2006