| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,911,126 – 6,911,225 |
| Length | 99 |
| Max. P | 0.570311 |
| Location | 6,911,126 – 6,911,225 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 80.75 |
| Mean single sequence MFE | -30.63 |
| Consensus MFE | -21.29 |
| Energy contribution | -20.90 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570311 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6911126 99 - 23771897 UCUUGG------GUCUUGGGUCUUCAAUC---------UUGGAUCCUCCAUUCAUUCAUGGGGGCAAUCAUUGAAGGAAGGCCUCUGCGCCAAACUUGGCAUUGCCUGAAUGAU ..(..(------((...((((((((..((---------...((((((((((......)))))))..)))...))..))))))))....((((....))))...)))..)..... ( -34.50) >DroPse_CAF1 187915 102 - 1 -CUUCG-------ACUUU-GCCUUCGACUUGGGGCUCUCUGGAU---UCAUUCAUUCAUGGGGGCAAUCAUUGAAGGAAGGCCUCCUCGCCAAACUUGGAAUUGCCUGAAUGAU -.(((.-------.....-.(((((((..(((.(((((((((((---......))))).))))))..)))))))))).((((.(((...........)))...))))))).... ( -27.20) >DroSim_CAF1 165995 98 - 1 CCUUGG------GUCUUG-GUCUUCAGUC---------UUGGAUCCUCCAUUCAUUCAUGGGGGCAAUCAUUGAAGGAAGGCCUCUGCGCCAAACUUGGCAUUGCCUGAAUGAU ..(..(------((...(-((((((..((---------...((((((((((......)))))))..)))...))..))))))).....((((....))))...)))..)..... ( -35.00) >DroEre_CAF1 178394 102 - 1 UCUUGGGCCUUGGUCUUGAGCCUUGAGUC---------UUGGAU---CCAUUCAUUCAUGGGGGCAAUCAUUGAAGGAAGGCCUCUGCGCCAAACUUGGCAUUGCCUGAAUGAU (((.(((((..(((.....)))..).)))---------).))).---....(((((((.((((((..((.......))..))))))..((((....))))......))))))). ( -31.40) >DroYak_CAF1 171872 96 - 1 UCUUGG------UUCUUGAGCUCUGAGUC---------UUGGGU---CCAUUCAUUCAUGGAGGCAAUCAUUGAAGGAAGGCCUUUGCGCCAAACUUGGCAAUGCCUGAAUGAU ...(((------..((..(((.....).)---------)..)).---))).(((((((....((((......(((((....)))))..((((....))))..))))))))))). ( -28.50) >DroPer_CAF1 185996 103 - 1 ACUUCG-------ACUUU-GCCUUCGACUUGGGGCUCUCUGGAU---UCAUUCAUUCAUGGGGGCAAUCAUUGAAGGAAGGCCUCCUCGCCAAACUUGGAAUUGCCUGAAUGAU ..(((.-------.....-.(((((((..(((.(((((((((((---......))))).))))))..)))))))))).((((.(((...........)))...))))))).... ( -27.20) >consensus UCUUGG______GUCUUG_GCCUUCAAUC_________UUGGAU___CCAUUCAUUCAUGGGGGCAAUCAUUGAAGGAAGGCCUCUGCGCCAAACUUGGCAUUGCCUGAAUGAU .......................................(((.....))).(((((((.((((((..((.......))..))))))..((((....))))......))))))). (-21.29 = -20.90 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:27 2006