Locus 2444

Sequence ID 3L_DroMel_CAF1
Location 6,910,475 – 6,910,570
Length 95
Max. P 0.754815
window3769

overview

Window 9

Location 6,910,475 – 6,910,570
Length 95
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 78.89
Mean single sequence MFE -26.91
Consensus MFE -15.61
Energy contribution -16.95
Covariance contribution 1.34
Combinations/Pair 1.28
Mean z-score -1.87
Structure conservation index 0.58
SVM decision value 0.49
SVM RNA-class probability 0.754815
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6910475 95 + 23771897
GAGCUUUCGGAAACGAAAGGAA-ACAUAU---UGU------AUAUAUGGUCUUUGGACUGGAUCUCUGGAUCUUUGGAUCGCUGGGAGUAGGGAAAGUAUGACGA-
...((((((....))))))...-.(((((---(..------...(((((((....))))...((((.(((((....)))).).))))))).....))))))....- ( -26.10)
>DroSec_CAF1 163812 95 + 1
CAGCUUUCGGAAACGAAAGGAA-ACAUAU---UGU------AUAUAUGGUCUUCGGACUGGAUCUCUGGAUCUUUGGAUCGUUGGGAGCAGGGAAAGUAUGACGG-
...((((((....))))))...-.(((((---(..------......((((....))))...((((((..((((.........)))).)))))).))))))....- ( -28.90)
>DroSim_CAF1 165345 95 + 1
AAGCUUUCGGAAACGAAAGGAA-ACAUAU---UGU------AUAUAUGGUCUUCGGACUGGAUCUCUGGAUCUUUGGAUCGCUGGGAGCAGGGAAAGUAUGACGA-
...((((((....))))))...-.(((((---(..------......((((....))))...(((((.((((....))))((.....))))))).))))))....- ( -30.20)
>DroEre_CAF1 177744 102 + 1
GAGCUUUCGGAAACGAAAGGAA-GCAUAU---UGUACGAGUAUAUAUGGUCUUUGGACUGGAUCUUUGGAUCUUUGGGUCUUUGGGAGCAGGGAAAGUAUGACGAC
...((((((....))))))...-((((((---((((....)))...((.((((.((((((((((....)))))...)))))..)))).)).....)))))).)... ( -27.70)
>DroYak_CAF1 171199 96 + 1
AAGCUUUCGGAAACGAAAGGAA-ACAUAU---UGU------AUAUAUGGUCUUUGGACUGGAUCUUUGGAUCAUUGGAUGUUUGGGAGCAGGGAAAGUAUGACGAC
...((((((....))))))...-.....(---(((------.(((((..((((((..(..(((.((..(....)..)).)))..)...))))))..))))))))). ( -26.40)
>DroPer_CAF1 185296 97 + 1
UGG--UUCGGUAUGGAAAGGCAUACGUAUACGUAUACGAGUAUGGAUUG-CAUUGGAUUGCGCUCUCAAAUGAGUGGA---CU---GGCAGCGAAAGUAUGACGAC
.((--(((.(((.......(((..(((((.((....)).)))))...))-).......)))((((......)))))))---))---....((....))........ ( -22.14)
>consensus
AAGCUUUCGGAAACGAAAGGAA_ACAUAU___UGU______AUAUAUGGUCUUUGGACUGGAUCUCUGGAUCUUUGGAUCGCUGGGAGCAGGGAAAGUAUGACGA_
...((((((....)))))).....(((((.................(((((....)))))((((....))))......((.(((....))).))..)))))..... (-15.61 = -16.95 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:26 2006