Locus 2443

Sequence ID 3L_DroMel_CAF1
Location 6,908,868 – 6,908,967
Length 99
Max. P 0.795177
window3768

overview

Window 8

Location 6,908,868 – 6,908,967
Length 99
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 82.48
Mean single sequence MFE -34.40
Consensus MFE -24.09
Energy contribution -24.15
Covariance contribution 0.06
Combinations/Pair 1.09
Mean z-score -2.31
Structure conservation index 0.70
SVM decision value 0.60
SVM RNA-class probability 0.795177
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6908868 99 - 23771897
UUUCCCGACAUUUCAGC-UUUUUCCCCCAAAAAACGAUGCGACGUCGCUGAUUGGAAGCUUCGGCAA--ACAGCUCGUUUUUGGGGCGGAGCAUAAGCUUUC-
..............(((-((.(((((((.((((((((.((......(((((..(....).)))))..--...)))))))))).))).))))...)))))...- ( -31.20)
>DroPse_CAF1 184291 96 - 1
AUUCCCGGCUUCG------CUUUCCCCCA-AAAACGAUGCGUCGUUGCUGAUUGGAAGCUUCGGCGCUUGCCUUUCGUUUUUGGGGCGGAGCAAAAGCUCUCG
......(((((.(------(((..(((((-(((((((.((((((..(((.......)))..)))))).......))))))))))))..))))..))))).... ( -42.60)
>DroEre_CAF1 176086 99 - 1
UUUCCCGACUUUUCUGC-UUUUUCCCCCAAAAAACGAUGCGACGUCGCUGAUUGGAAGCUUCGGCAA--ACAGUUCGUUUUUGGGGCGGAGCUUAAGCUUUC-
...............((-((.(((((((.((((((((.(((....)))..((((...((....))..--.)))))))))))).))).))))...))))....- ( -31.10)
>DroYak_CAF1 169505 100 - 1
UUUCCCGACUUUUCUGCCUUUUUCCCCCAAAAAACGAUGCGACGUCGCUGAUUGGAAGCUUCGGCAA--ACAGCUCGUUUUUGGGGCGGAGCAUAAACUUUC-
..........(((.(((....((((((((((((.(((.((......(((((..(....).)))))..--...)))))))))))))).)))))).))).....- ( -27.10)
>DroAna_CAF1 184977 96 - 1
U-UCCCGGCUCUGCC---ACUUUCCCCCAAAAAGCAAUGCGACGUCGCUGAUUGGAAGCUUCGGCAC--CCGGCUCGGUUUUGGGGCGGAGCAAAAGCUUGC-
.-.....((((((((---........(((((((((...(((....)))....(((..((....))..--))))))...))))))))))))))..........- ( -31.80)
>DroPer_CAF1 182269 96 - 1
AUUCCCGGCUUCG------CUUUCCCCCA-AAAACGAUGCGUCGUUGCUGAUUGGAAGCUUCGGCGCUUGCCUUUCGUUUUUGGGGCGGAGCAAAAGCUCUCG
......(((((.(------(((..(((((-(((((((.((((((..(((.......)))..)))))).......))))))))))))..))))..))))).... ( -42.60)
>consensus
UUUCCCGACUUUGC____UCUUUCCCCCAAAAAACGAUGCGACGUCGCUGAUUGGAAGCUUCGGCAA__ACAGCUCGUUUUUGGGGCGGAGCAAAAGCUUUC_
.......................((((((.(((((((.(((....))).........((....)).........)))))))))))).)((((....))))... (-24.09 = -24.15 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:25 2006