Locus 2442

Sequence ID 3L_DroMel_CAF1
Location 6,905,332 – 6,905,449
Length 117
Max. P 0.978213
window3767

overview

Window 7

Location 6,905,332 – 6,905,449
Length 117
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 77.72
Mean single sequence MFE -28.09
Consensus MFE -16.34
Energy contribution -17.22
Covariance contribution 0.88
Combinations/Pair 1.15
Mean z-score -2.38
Structure conservation index 0.58
SVM decision value 1.81
SVM RNA-class probability 0.978213
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6905332 117 - 23771897
CGUUUUUAUUUUAUUUUAUAGCCUGAAAAAAGGGCCUCAGCUGUGGGCGAACUGAAAGAA-UGGGAUCGUCAAGAGGCGAUGCAAAACCCAGUGGCUGUAAGAUGUAAGACUAAAGCA
.(((((..(((((((((((((((..........((((.......))))..((((......-..(.((((((....)))))).)......)))))))))))))..))))))..))))). ( -33.04)
>DroSec_CAF1 158748 112 - 1
CGUUUUUAUUUUAUUUUAUAGCCUGAAAAAGGGGACUG-----AUUGCGAACCGAAAGAC-AGGGAUCGUCAAGAUGCGAAGAAAAACCCAGGAGCUGUAAGAUGGAAGACUAAAGCA
.(((((..(((((((((((((((((....((....)).-----.((((...((.......-.)).(((.....))))))).........)))..))))))))))))))....))))). ( -27.90)
>DroSim_CAF1 160493 112 - 1
CGUUUUUAUUUUAUUUUAUAGCCUGAAAAAAGGGACUG-----AUUGCGAACCGAAAGAC-GGGGAUCGUCAAGAUGCGAAGAAAAACCCAGGAGCUGUAAAAUGGAAGACUAAAGCA
.(((((..((((((((((((((((.......(((....-----........(((.....)-))(.(((.....))).).........))).)).))))))))))))))....))))). ( -27.10)
>DroEre_CAF1 172500 116 - 1
CGUUUUUAUUUUAUUUUAUAGCCUGAAUAAAGAACGCCAGCAGAUUGCGAACUGAAAGAAAAGGGAUCAUCACGAGGAGAUGAAAGAACCAGUAGCUGUAAGAUGAA--AUUAAAGCA
.(((((.((((((((((((((((((...........((.((.....))...((........)))).(((((.......)))))......)))..)))))))))))))--)).))))). ( -28.70)
>DroYak_CAF1 165276 102 - 1
CGUUUUUAUUUUAUUUUAUAGCCUGAAUAAAGAAACCCAGCAGAUUGCGAACUGAAGAAA--------------AGGAGAUCUAAGAAACAGUAGCUGUAAGAUGAA--AUUAAAGCA
.(((((.((((((((((((((((((..............((.....))...((..(((..--------------......))).))...)))..)))))))))))))--)).))))). ( -23.70)
>consensus
CGUUUUUAUUUUAUUUUAUAGCCUGAAAAAAGGGACUCAGC_GAUUGCGAACUGAAAGAA_AGGGAUCGUCAAGAGGCGAUGAAAAACCCAGUAGCUGUAAGAUGAAAGACUAAAGCA
.(((((..(((((((((((((((((...........................(....)........((((......)))).........)))..))))))))))))))....))))). (-16.34 = -17.22 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:24 2006