Locus 2441

Sequence ID 3L_DroMel_CAF1
Location 6,902,939 – 6,903,052
Length 113
Max. P 0.842119
window3766

overview

Window 6

Location 6,902,939 – 6,903,052
Length 113
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 86.41
Mean single sequence MFE -27.23
Consensus MFE -16.70
Energy contribution -17.62
Covariance contribution 0.92
Combinations/Pair 1.18
Mean z-score -3.09
Structure conservation index 0.61
SVM decision value 0.75
SVM RNA-class probability 0.842119
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6902939 113 + 23771897
CC--GUUGCCUAUGAUAAAUGGUUUCCAAAG-GAAACCUCUGCGACGAAAGUCUAAGGGAUUGGAUAAAAAGCCAGUUCAAUCCUUUACUUUACUUUAAUACCAUUUAUAUCAAAA
..--........(((((...(((((((...)-)))))).....(((....)))(((((((((((((.........)))))))))))))....................)))))... ( -30.40)
>DroSec_CAF1 151448 107 + 1
CC--GUUGCCUAUGAUAAAUGGUUUCCAAAG-GAAACCUCUGCGACGAAAGU-UGAGGGAUUGGAUAAAAAGCCAGUUCAAUCCUUUA-----CUUUAAUACCAUUUAUAUCAAAA
.(--(((((....((.....(((((((...)-)))))))).))))))(((((-.((((((((((((.........)))))))))))))-----))))................... ( -30.70)
>DroSim_CAF1 158104 107 + 1
CC--GUUGCCUAUGAUAAAUGGUUUCCAAAG-GAAACCUCUGCGACGAAAGU-UGAAGGAUUGGAUAAAAAGCCAGUUCAAUCCUUUA-----CUUUAAUACCAUUUAUAUCAAAA
.(--(((((....((.....(((((((...)-)))))))).))))))(((((-.((((((((((((.........)))))))))))))-----))))................... ( -31.00)
>DroEre_CAF1 169603 107 + 1
CC--GUUGCCUAUGAUAAAUGGUUUCCAAAG-GAAAUCUCCGCGAGGACAGUCUAAGGUAUUGUAUAAA-AACCAGUUCAAGCCAUUA-----CUUUAAUACCAUUAAUACUAAAA
.(--(.(((((..(((....(((((((...)-))))))(((....)))..)))..))))).))......-..................-----....................... ( -17.80)
>DroYak_CAF1 162965 111 + 1
CUGUGUUGCCUAUGAUAAAUGGUUUCCAAAGGGAAACCUUUGCGUAGAGAGUCUAAGGGAUAGGAUAAAAAACCAGUACAAUCCUUUA-----CUUUCAAUCAAUUAAUAAUAAAA
...(((((.(((((.((((.(((((((....)))))))))))))))).(((..((((((((.(...............).))))))))-----..)))..........)))))... ( -26.26)
>consensus
CC__GUUGCCUAUGAUAAAUGGUUUCCAAAG_GAAACCUCUGCGACGAAAGUCUAAGGGAUUGGAUAAAAAGCCAGUUCAAUCCUUUA_____CUUUAAUACCAUUUAUAUCAAAA
............(((((...((((((......)))))).........((((..(((((((((((((.........))))))))))))).....))))...........)))))... (-16.70 = -17.62 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:23 2006