| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,902,455 – 6,902,549 |
| Length | 94 |
| Max. P | 0.648672 |
| Location | 6,902,455 – 6,902,549 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 76.55 |
| Mean single sequence MFE | -19.52 |
| Consensus MFE | -13.36 |
| Energy contribution | -13.91 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.648672 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6902455 94 + 23771897 UCAGC-----------CUGCGAUUUUUGCUUAAAUCUGCGCGCAUGUUUUGUGCGGUA-----AAUAAAAAAUGCAAAAUAAAUGCGUAAAUCUCUAACGGGGCAC----AAGA-- ...((-----------.((((((((......))))).))).))...((((((((....-----........(((((.......)))))....(((....)))))))----))))-- ( -23.70) >DroVir_CAF1 194480 111 + 1 AUAAAUUGUACUCCUUUUUGGAUAUUUGCUUAAAUCUGCGCGCAUGUUUUGUGUGGUA-----AAUAAAAAAUGCAAAAUAAAUGCGUAAAUCUCUAACCGAGAGCAAGAAAGAUU ...........(((.....)))..(((((.......((((((..((((((((((....-----........))))))))))..))))))..((((.....)))))))))....... ( -24.10) >DroPse_CAF1 178326 91 + 1 ----------------AUGUGAUAUUUCCUUAAAUCUGCGCGCAUGUUUUGUGUGGGGCAUAGUAUAAAAAAUGCAAAAUAAAUGCGUAAAUCUCUAACAGCGA------AAG--- ----------------........((((((.....((.((((((.....)))))).)).............(((((.......)))))...........)).))------)).--- ( -13.90) >DroWil_CAF1 247992 83 + 1 -------------------GGUUAUUUGCUUAAAUCUGCGCGCAUGUUUUGUGUGGUA-----AAUAAAAAAUGCAAAAUAAAUGCGUAAAUCUCGUAA-GAGA------AAGG-- -------------------.........(((.....((((((..((((((((((....-----........))))))))))..))))))..((((....-))))------))).-- ( -20.60) >DroAna_CAF1 176680 94 + 1 GGAAC-----------UUGCGAUUUUUGCUGAAAUCUGCGCGCAUGUUUUGUGUGGUA-----AAUAAAAAAUGCAAAAUAAAUGCGUAAAUCUCUAACAGGGAAG----AUGA-- .....-----------..((((((((....)))))).))(((((((((((((((....-----........)))))))))..))))))...((((.....))))..----....-- ( -20.90) >DroPer_CAF1 176267 91 + 1 ----------------AUGUGAUAUUUCCUUAAAUCUGCGCGCAUGUUUUGUGUGGGGCAUAGUAUAAAAAAUGCAAAAUAAAUGCGUAAAUCUCUAACAGCGA------AAG--- ----------------........((((((.....((.((((((.....)))))).)).............(((((.......)))))...........)).))------)).--- ( -13.90) >consensus ________________AUGCGAUAUUUGCUUAAAUCUGCGCGCAUGUUUUGUGUGGUA_____AAUAAAAAAUGCAAAAUAAAUGCGUAAAUCUCUAACAGAGA______AAGA__ ....................................((((((..((((((((((.................))))))))))..))))))..((((.....))))............ (-13.36 = -13.91 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:22 2006