Locus 244

Sequence ID 3L_DroMel_CAF1
Location 664,383 – 664,499
Length 116
Max. P 0.691684
window365

overview

Window 5

Location 664,383 – 664,499
Length 116
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 78.39
Mean single sequence MFE -36.53
Consensus MFE -20.83
Energy contribution -19.03
Covariance contribution -1.80
Combinations/Pair 1.45
Mean z-score -1.77
Structure conservation index 0.57
SVM decision value 0.33
SVM RNA-class probability 0.691684
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 664383 116 - 23771897
AACGGAUUCUGGCACGAAAGGCCAUCGCAGACAUCCUGUUUGAGGGAUGCAUGGGCAACCUGCGAGUAAACCGCGGCGAACAACAGAGCACCGUGGCAAAUCAUUUCUAAACCCUU
...((....((((.(....)))))((((((.((((((......)))))))..((....))))))).....((((((.(..(....)..).))))))................)).. ( -37.70)
>DroVir_CAF1 27115 116 - 1
AGCGUAUUCUGGCGCGAAAAGCCAUCGCGGACAUCCUAUUCGAGGGCUGCAUGGGAAAUUUACGUGUUAAUCGCGGCGAAUCUCGCUCUACUGUGGAUAACUAUUUGUAAACAUAC
((((.((((.(.(((((..((((.(((.((....))....))).))))(((((.........)))))...))))).)))))..)))).(((.((((....))))..)))....... ( -31.70)
>DroPse_CAF1 26535 116 - 1
AAAGAAUCUUGGCACGAAAAGCCAUUGCCGAUAUUCUUUUUGAAGGCUGCAUGGGCAAUUUGCGAAUAAACCGUGGCGAAACACGCAGCACAGUGGGAAACCAUUUGUAGAUCUAA
(((((((.((((((...........)))))).)))))))......(((((....((.....)).........(((......))))))))(((((((....))).))))........ ( -34.20)
>DroEre_CAF1 20938 116 - 1
AACGGAUUCUGGCCAGAAAGGCCAUCGCGGACAUCCUGUUUGAGGGAUGCAUGGGCAACCUGCGAAUAAACCGUGGCGAUCAGCAGAGCACCGUGGGAAAUCAUUUCUGAAUACUA
.((((.((((((((.....))))..(((((..(((((......)))))(((.((....))))).......)))))((.....))))))..))))(((((....)))))........ ( -37.20)
>DroYak_CAF1 21360 116 - 1
AACGGAUUCUGGCCCGAAAGGCCAUCGCGGACAUCCUGUUCGAGGGAUGCAUGGGCAACCUGCGAAUAAACCGUGGCGAACAGCAGAGCACCGUGGGAAAUCACUUCUGAAUCCUA
...((((((((((.(....)))))((((((...(((((((((.((..((((.((....))))))......))....)))))))..))...))))))............)))))).. ( -44.20)
>DroPer_CAF1 26939 116 - 1
AAAGAAUCUUGGCACGAAAAGCCAUUGCCGAUAUUCUUUUUGAAGGCUGCAUGGGCAAUUUGCGAAUAAACCGUGGCGAAACACGCAGCACAGUGGGAAACCAUUUGUAGAUCUAA
(((((((.((((((...........)))))).)))))))......(((((....((.....)).........(((......))))))))(((((((....))).))))........ ( -34.20)
>consensus
AACGGAUUCUGGCACGAAAAGCCAUCGCGGACAUCCUGUUUGAGGGAUGCAUGGGCAACCUGCGAAUAAACCGUGGCGAACAACACAGCACCGUGGGAAACCAUUUCUAAAUCCAA
.........((((.......))))((((.(......((((((.(((.(((....))).))).)))))).....).)))).....((((....((((....))))))))........ (-20.83 = -19.03 +  -1.80) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:19 2006