Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 664,383 – 664,499 |
Length | 116 |
Max. P | 0.691684 |
Location | 664,383 – 664,499 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 78.39 |
Mean single sequence MFE | -36.53 |
Consensus MFE | -20.83 |
Energy contribution | -19.03 |
Covariance contribution | -1.80 |
Combinations/Pair | 1.45 |
Mean z-score | -1.77 |
Structure conservation index | 0.57 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691684 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 664383 116 - 23771897 AACGGAUUCUGGCACGAAAGGCCAUCGCAGACAUCCUGUUUGAGGGAUGCAUGGGCAACCUGCGAGUAAACCGCGGCGAACAACAGAGCACCGUGGCAAAUCAUUUCUAAACCCUU ...((....((((.(....)))))((((((.((((((......)))))))..((....))))))).....((((((.(..(....)..).))))))................)).. ( -37.70) >DroVir_CAF1 27115 116 - 1 AGCGUAUUCUGGCGCGAAAAGCCAUCGCGGACAUCCUAUUCGAGGGCUGCAUGGGAAAUUUACGUGUUAAUCGCGGCGAAUCUCGCUCUACUGUGGAUAACUAUUUGUAAACAUAC ((((.((((.(.(((((..((((.(((.((....))....))).))))(((((.........)))))...))))).)))))..)))).(((.((((....))))..)))....... ( -31.70) >DroPse_CAF1 26535 116 - 1 AAAGAAUCUUGGCACGAAAAGCCAUUGCCGAUAUUCUUUUUGAAGGCUGCAUGGGCAAUUUGCGAAUAAACCGUGGCGAAACACGCAGCACAGUGGGAAACCAUUUGUAGAUCUAA (((((((.((((((...........)))))).)))))))......(((((....((.....)).........(((......))))))))(((((((....))).))))........ ( -34.20) >DroEre_CAF1 20938 116 - 1 AACGGAUUCUGGCCAGAAAGGCCAUCGCGGACAUCCUGUUUGAGGGAUGCAUGGGCAACCUGCGAAUAAACCGUGGCGAUCAGCAGAGCACCGUGGGAAAUCAUUUCUGAAUACUA .((((.((((((((.....))))..(((((..(((((......)))))(((.((....))))).......)))))((.....))))))..))))(((((....)))))........ ( -37.20) >DroYak_CAF1 21360 116 - 1 AACGGAUUCUGGCCCGAAAGGCCAUCGCGGACAUCCUGUUCGAGGGAUGCAUGGGCAACCUGCGAAUAAACCGUGGCGAACAGCAGAGCACCGUGGGAAAUCACUUCUGAAUCCUA ...((((((((((.(....)))))((((((...(((((((((.((..((((.((....))))))......))....)))))))..))...))))))............)))))).. ( -44.20) >DroPer_CAF1 26939 116 - 1 AAAGAAUCUUGGCACGAAAAGCCAUUGCCGAUAUUCUUUUUGAAGGCUGCAUGGGCAAUUUGCGAAUAAACCGUGGCGAAACACGCAGCACAGUGGGAAACCAUUUGUAGAUCUAA (((((((.((((((...........)))))).)))))))......(((((....((.....)).........(((......))))))))(((((((....))).))))........ ( -34.20) >consensus AACGGAUUCUGGCACGAAAAGCCAUCGCGGACAUCCUGUUUGAGGGAUGCAUGGGCAACCUGCGAAUAAACCGUGGCGAACAACACAGCACCGUGGGAAACCAUUUCUAAAUCCAA .........((((.......))))((((.(......((((((.(((.(((....))).))).)))))).....).)))).....((((....((((....))))))))........ (-20.83 = -19.03 + -1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:19 2006