Locus 2437

Sequence ID 3L_DroMel_CAF1
Location 6,898,160 – 6,898,258
Length 98
Max. P 0.908127
window3762

overview

Window 2

Location 6,898,160 – 6,898,258
Length 98
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 77.93
Mean single sequence MFE -21.47
Consensus MFE -16.79
Energy contribution -17.60
Covariance contribution 0.81
Combinations/Pair 1.08
Mean z-score -1.54
Structure conservation index 0.78
SVM decision value 1.06
SVM RNA-class probability 0.908127
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6898160 98 + 23771897
---CUUCUUU-----U-UUACGCCAC--ACUCUCCCCUUUUUUGAUAUGAUUAACAUGUUGAGGUGUUGAUUUGUGAUCCGCAUUAAUUUGUCAAUCGCAAGUCGUGCG
---.......-----.-...((((((--((.(((.........((((((.....))))))))))))).((((((((((..(((......)))..))))))))))).))) ( -25.20)
>DroPse_CAF1 173485 92 + 1
---CUUCCUC---CGU-UUGCGCCU----------UUUUUUUUGAUAUGAUAAACUUGUUGAGGUGUUGAUUUGUGAUCCGCAUUAAUUUGUCAAUCACAAGUCGUGCG
---.......---...-..((((..----------....(((..(((.........)))..)))....((((((((((..(((......)))..)))))))))))))). ( -21.80)
>DroGri_CAF1 163970 102 + 1
---CGUGUCUUUUU-U-GUCCGCAUC--UAUCUUUUAUUUUUUGAUAUGAUUAACAUGUUGAGGUGUUGAUUUCUGAUCCGCAUUAAUUUGUCAAUCACAAGUCGUGCG
---...........-.-...(((((.--...........(((..(((((.....)))))..)))....(((((.((((..(((......)))..)))).)))))))))) ( -19.20)
>DroMoj_CAF1 171737 95 + 1
---CGGAAUUCUCC-A-UUUCGCUUG---------UAUUUUUUGAUAUGAUAAACAUGUUGAGGUGUUGAUUUCUGAUCCGCAUUAAUUUGUCAAUCGCAAGUCGUGCG
---(((((.((..(-(-((((((.((---------(..((........))...))).).)))))))..)).)))))...(((((..((((((.....)))))).))))) ( -20.40)
>DroAna_CAF1 171947 101 + 1
GCUCUUCCCU-----UUUUCCCCUACUCAGUAUCCC---UUCUAAUAUGAUAAACAUGUUGAGGUGUUGAUUUGUGAUCCGAAUUAAUUUGUCAAUCACAAGUCGUGCG
((.(......-----....................(---(((.((((((.....))))))))))....((((((((((.((((....))))...))))))))))).)). ( -20.40)
>DroPer_CAF1 171395 91 + 1
---CUUCCUC---CGU-UUGCGCCU----------UUU-UUUUGAUAUGAUAAACUUGUUGAGGUGUUGAUUUGUGAUCCGCAUUAAUUUGUCAAUCACAAGUCGUGCG
---.......---...-..((((..----------...-(((..(((.........)))..)))....((((((((((..(((......)))..)))))))))))))). ( -21.80)
>consensus
___CUUCCUU___C_U_UUCCGCCUC_________UAUUUUUUGAUAUGAUAAACAUGUUGAGGUGUUGAUUUGUGAUCCGCAUUAAUUUGUCAAUCACAAGUCGUGCG
....................(((................((((((((((.....))))))))))....((((((((((..(((......)))..))))))))))..))) (-16.79 = -17.60 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:19 2006