| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,896,840 – 6,896,937 |
| Length | 97 |
| Max. P | 0.970213 |
| Location | 6,896,840 – 6,896,937 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 75.99 |
| Mean single sequence MFE | -16.17 |
| Consensus MFE | -9.79 |
| Energy contribution | -10.48 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.970213 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6896840 97 - 23771897 CA-----CAUCAACGCAUCACAUCCC----------CGAACAGCCUGAAAACAACCUAAAAACGCGUGUCAUUAAAAUAAUUGAUACGCUUGUUCGAACAACGCCUCUACAC ..-----...................----------(((((((..((....))..........((((((((..........)))))))))))))))................ ( -16.50) >DroPse_CAF1 171916 83 - 1 CG------AUACUCGCACUCC--CC-------------------CCGAUACGCAGGUC--AAUGCGACUCAUUAAAAUAAUUGAUACGCUUGUUCGAACAACGCCUUUACAC ((------(.((..((.....--..-------------------..((..((((....--..))))..))(((((.....)))))..))..)))))................ ( -10.60) >DroSec_CAF1 145422 97 - 1 CA-----CAUCAACGCAUCACAUCCC----------CGAACAGCCCGAGAACAACCUCAAAACGCGUGUCAUUAAAAUAAUUGAUACGCUUGUUCGAACAACGCCUCUACAC ..-----...................----------(((((((...(((......))).....((((((((..........)))))))))))))))................ ( -21.10) >DroSim_CAF1 151979 97 - 1 CA-----CAUCAACGCAUCACAUCCC----------CGAACAGCCCGAAAACAACCUCAAAACGCGUGUCAUUAAAAUAAUUGAUACGCUUGUUCGAACAACGCCUCUACAC ..-----...................----------(((((((...((........)).....((((((((..........)))))))))))))))................ ( -17.80) >DroYak_CAF1 156649 110 - 1 CACAUCACAUCAUCUCAUCAC--CCCUCGGACACACCGAAAACACCGAAAACAACCUCAGAAUGCGUGUCAUUAAAAUAAUUGAUACGCUUGUUCGAGCAACGCCUUUACAC .....................--..((((((((...((.......))................((((((((..........)))))))).)))))))).............. ( -20.40) >DroPer_CAF1 169832 83 - 1 CG------AUACUCGCACUCC--CC-------------------CCGAUACGCAGGUC--AAUGCGACUCAUUAAAAUAAUUGAUACGCUUGUUCGAACAACGCCUUUACAC ((------(.((..((.....--..-------------------..((..((((....--..))))..))(((((.....)))))..))..)))))................ ( -10.60) >consensus CA_____CAUCAACGCAUCAC__CCC__________CGAACAGCCCGAAAACAACCUCAAAACGCGUGUCAUUAAAAUAAUUGAUACGCUUGUUCGAACAACGCCUCUACAC ..............((...............................................((((((((..........))))))))((((....)))).))........ ( -9.79 = -10.48 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:18 2006