Locus 2435

Sequence ID 3L_DroMel_CAF1
Location 6,891,391 – 6,891,482
Length 91
Max. P 0.659333
window3760

overview

Window 0

Location 6,891,391 – 6,891,482
Length 91
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 78.64
Mean single sequence MFE -22.18
Consensus MFE -17.45
Energy contribution -17.70
Covariance contribution 0.25
Combinations/Pair 1.10
Mean z-score -1.05
Structure conservation index 0.79
SVM decision value 0.26
SVM RNA-class probability 0.659333
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6891391 91 - 23771897
-GGGCCAUUUGAUGAUUUUUGCGUCACCGUUGGUCAAAAUCAUUUCGAGCGCAAGCAACUGGAAACUGUAUAAAAAUAAUGAAAAAGGAG-----GG----------------------
-.(((((..(((((.......)))))....)))))....(((((....((....)).((.(....).))........)))))........-----..---------------------- ( -19.40)
>DroPse_CAF1 165295 115 - 1
-GGGCCAUUUGAUGAUUUUUGCGUCACCGUUGGUCAAAAUCAUUUCGAGCGCAAGCAACUGGAAACUGUAUAAAAAUAAUGAAA-U-GAAGGAAGGAGAGA-UGUUGGAAAAAGGCAGA
-..(((...(((((.......))))).((((..((....((((((((.((....)).((.(....).))..........)))))-)-))......))..))-)).........)))... ( -26.10)
>DroEre_CAF1 157666 93 - 1
-GGGCCAUUUGAUGAUUUUUGCGUCACCGUUGGUCAAAAUCAUUUCGAGCGCAAGCAACUGGAAACUGUAUAAAAAUAAUGAAAAUGGAG-GG--GG----------------------
-.(((((..(((((.......)))))....)))))....((((((((.((....)).((.(....).))..........)).))))))..-..--..---------------------- ( -20.20)
>DroMoj_CAF1 162322 106 - 1
UUGUCCAUUUGAUGAUUUUUGCGUCACCGUUGCUCGAAAUCAUUCCGAGCGCAAGCAACUGGAAACUGUAUAAAAAUAAUGAAAAUCA--CAAAAAAAAAAAAAGAAG-----------
.......((((.((((((((........((((((.(...((.....))...).)))))).(....)..............))))))))--))))..............----------- ( -18.20)
>DroAna_CAF1 165011 101 - 1
-GGACCAUUUGAUGAUUUUUGCGUCACCGUUGGUCAAAAUCAUUUCGAGCGCAAGCAACUGGAAACUGUAUAAAAAUAACGAAAAAGACG-----GAUAGA-UAGUGG-----------
-...((((((((((.......)))))((((((((....))).(((((.((....)).((.(....).))..........)))))..))))-----).....-.)))))----------- ( -23.10)
>DroPer_CAF1 163125 115 - 1
-GGGCCAUUUGAUGAUUUUUGCGUCACCGUUGGUCAAAAUCAUUUCGAGCGCAAGCAACUGGAAACUGUAUAAAAAUAAUGAAA-U-GAAGGAAGGAGAGA-UGUUGGAAAAAGGCAGA
-..(((...(((((.......))))).((((..((....((((((((.((....)).((.(....).))..........)))))-)-))......))..))-)).........)))... ( -26.10)
>consensus
_GGGCCAUUUGAUGAUUUUUGCGUCACCGUUGGUCAAAAUCAUUUCGAGCGCAAGCAACUGGAAACUGUAUAAAAAUAAUGAAAAUGGAG_GA__GA_AGA_U__UGG___________
..(((((..(((((.......)))))....))))).......(((((.((....)).((.(....).))..........)))))................................... (-17.45 = -17.70 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:17 2006