| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,889,724 – 6,889,818 |
| Length | 94 |
| Max. P | 0.533264 |
| Location | 6,889,724 – 6,889,818 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 78.95 |
| Mean single sequence MFE | -28.40 |
| Consensus MFE | -17.13 |
| Energy contribution | -17.63 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.533264 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6889724 94 - 23771897 CGACUUAACCACAGCAG--GCUUAUGCCUGCGGUCGCUUCGAUUGCAUCAGAUGAGGUGCGA--------------AUCCCAAUCGGAAGCUAAAUUAGUGCUAAAAAAA .........(((.((((--((....))))))....((((((((((((((......)))))(.--------------....))))).))))).......)))......... ( -28.20) >DroSec_CAF1 138256 96 - 1 CGACUUAACCGCAGCAGACGCUUAUGCCUGCGGUCGCUGCGAUUGCAUCAGAUGAGGUGCGA--------------AUCCCAAUCGGAAGCUAAAUCAGUGCUAAAAAAA (((......((((((.(((((........)).))))))))).(((((((......)))))))--------------.......)))..(((.........)))....... ( -27.60) >DroSim_CAF1 144407 94 - 1 CGACUUAACCGCAGCAGACGCUUAUGCCUGCGGUCGCUGCGAUUGCAUCAGAUGAGGUGCGA--------------AUCCCAAUCGGAAGCUAAAUCAGUGCUAAAAA-- (((......((((((.(((((........)).))))))))).(((((((......)))))))--------------.......)))..(((.........))).....-- ( -27.60) >DroEre_CAF1 155799 110 - 1 CGACCUAACCGCAGCAGACGCUUAUGCCUGCGGUCGCGUCGAUUGCAUCAGAUGAGGUGCGAAAUCGCAAUCGAGCAUCCCAAUCGGAAGCUAAAACAGUGCUAAAAAAU ((((...(((((((((........)).)))))))...)))).(((((((......)))))))....(((....(((.(((.....))).))).......)))........ ( -35.00) >DroYak_CAF1 147995 109 - 1 CGACCUAACCGCAGCAGACGCUUAUGCCUGCGGUCGCCUCGAUUGCAACAGAUGAGGUGCGAAAUCGCAAGCGAGCAUCCCAAUCGGAAGCUAAAUCAGUGCUAGAAAA- .......(((((((((........)).))))))).((((((.(((...))).))))))(((....))).(((((((.(((.....))).))).......))))......- ( -31.31) >DroPer_CAF1 161459 94 - 1 -GACCAGACCGCAACAAACGCUUAUGCCUGCGGUCGAGUAAAUUGCAUCAGAUGGGAAUCGAAA-------------UCUUAAUCGAAAAUCAGUUGAUCCCCACAAA-- -.((..(((((((......((....)).)))))))..)).............((((..((((..-------------......))))..(((....))).))))....-- ( -20.70) >consensus CGACCUAACCGCAGCAGACGCUUAUGCCUGCGGUCGCUUCGAUUGCAUCAGAUGAGGUGCGA______________AUCCCAAUCGGAAGCUAAAUCAGUGCUAAAAAA_ .......(((((((((........)).)))))))(((.....(((((((......)))))))...............(((.....)))..........)))......... (-17.13 = -17.63 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:16 2006