Locus 2432

Sequence ID 3L_DroMel_CAF1
Location 6,852,284 – 6,852,377
Length 93
Max. P 0.950805
window3755

overview

Window 5

Location 6,852,284 – 6,852,377
Length 93
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 76.12
Mean single sequence MFE -14.95
Consensus MFE -7.75
Energy contribution -8.88
Covariance contribution 1.12
Combinations/Pair 1.07
Mean z-score -2.50
Structure conservation index 0.52
SVM decision value 1.41
SVM RNA-class probability 0.950805
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6852284 93 + 23771897
ACCGCAACCCCUUCUCUUCUCUACACAGUGCCAAAAAUGGGCAUACAAAUGGA-AUAAUCUUAUUUUCCAACAU---GGUAAAAUU----------------UGCAACACUGU
........................(((((((((....)))((((((...((((-(..........)))))....---.))).....----------------)))..)))))) ( -14.50)
>DroSec_CAF1 108379 88 + 1
ACCGCAACCCCUUCUCUUCUGUACACAGUGCCAAAAAUUGGCAUACAAAUGUAAAUAAUCUAAUUUUGCAAUAU---AGUAAAAUA----------------UGCAA------
...(((...............((((..((((((.....)))))).....)))).........(((((((.....---.))))))).----------------)))..------ ( -15.40)
>DroSim_CAF1 112938 88 + 1
ACCGCAACCCCUUCUCUUCUGUACACAGUGCCAAAAAUUGGCAUACAAAUGGAAAUAAUCUAAUUUUCCAAUAA---AGUAAAAUA----------------UGCAA------
...(((.....................((((((.....)))))).....((((((.........))))))....---.........----------------)))..------ ( -15.90)
>DroEre_CAF1 124796 107 + 1
ACCGCAACCCCUUCUCUUGCAUACACAGUGCAAAAAUUUGGCAUACAAAUUGAAACAAUGUCAUUUACCAUUAUUUAGGUAAAACUCCACCACUUACAAUCUUACAA------
...(((..........((((((.....)))))).((((((.....)))))).......)))..((((((........))))))........................------ ( -14.00)
>consensus
ACCGCAACCCCUUCUCUUCUGUACACAGUGCCAAAAAUUGGCAUACAAAUGGAAAUAAUCUAAUUUUCCAAUAU___AGUAAAAUA________________UGCAA______
...(((.....................((((((.....)))))).....((((((.........))))))................................)))........ ( -7.75 =  -8.88 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:13 2006