Locus 2431

Sequence ID 3L_DroMel_CAF1
Location 6,851,301 – 6,851,409
Length 108
Max. P 0.670335
window3754

overview

Window 4

Location 6,851,301 – 6,851,409
Length 108
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 75.62
Mean single sequence MFE -20.74
Consensus MFE -6.64
Energy contribution -7.76
Covariance contribution 1.12
Combinations/Pair 1.30
Mean z-score -1.82
Structure conservation index 0.32
SVM decision value 0.29
SVM RNA-class probability 0.670335
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6851301 108 + 23771897
AAUAUUAAUUACAGUAAGUGUUGUACUUGCUUCUUCACCUUAAUGAAGAAACUC-CCCU-UUCAUC-------UUUCUCAAAGUUACCUUACUUUGAGCGAGAUUACAGAGUGGAAA
.............(((((((...)))))))(((((((......)))))))..((-(.((-((.(((-------((.((((((((......)))))))).)))))...)))).))).. ( -30.20)
>DroSec_CAF1 107471 86 + 1
AAUAUUAAUUACAGUAAGUGUUGUACUUGCUCCUUUACCCUAAUGAAGAAACCC-ACCU-UUCAUC-------UUUCUAAAAGAUACCUUGCUUU----------------------
............((((((((...)))))))).(((((......)))))......-....-...(((-------((.....)))))..........---------------------- (  -8.60)
>DroSim_CAF1 112000 100 + 1
AAUAUUAAUUACAGUAAGUGUUGUACUUGCUCCUUCACCUUAAUGAAGAAGCCCCCCCU-UUCAUC-------UUUCUAAAAGAUACCUUACUUUAGGUGAGAUUAUA---------
.....(((((..((((((((...))))))))...((((((.....((((((......))-)..(((-------((.....)))))..))).....)))))))))))..--------- ( -16.60)
>DroEre_CAF1 123757 115 + 1
AAUAUUAAUUACAAUAAGUGUUGUACUUGCCGGUUCACCUUAAUGAAGAAACUC-CCCU-UUCACCUUUCACUUUUCCAGAACUUAACUUACUAGAGGCGAGAUUACAGUGCGCAGA
.................(..((((((((((((((((.......((((((((...-...)-)))....))))........)))))...((....)).))))))..)))))..)..... ( -19.66)
>DroYak_CAF1 114555 116 + 1
AAUAUUAAUUACAAUAAGUAUUGUACUUGCUGCUUCACCUUAAUGAAGAAACUC-CCCUUUUCACCUUUCGCUUUUCUAGAAGUUAACUUACUUUGGGCGAGAUUACAGUGGGGAGA
.....(((.((((((....)))))).)))...(((((......)))))...(((-(((........((((((((....(((((....))).))..)))))))).......)))))). ( -28.66)
>consensus
AAUAUUAAUUACAGUAAGUGUUGUACUUGCUCCUUCACCUUAAUGAAGAAACUC_CCCU_UUCAUC_______UUUCUAAAAGUUACCUUACUUUAGGCGAGAUUACAG_G_G_A_A
.........(((((......)))))((((((.(((((......)))))...............................((((........)))).))))))............... ( -6.64 =  -7.76 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:12 2006