| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,849,406 – 6,849,505 |
| Length | 99 |
| Max. P | 0.631131 |
| Location | 6,849,406 – 6,849,505 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 83.45 |
| Mean single sequence MFE | -30.42 |
| Consensus MFE | -23.03 |
| Energy contribution | -23.20 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.631131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6849406 99 - 23771897 ---CCUGCCUUCUAAGUGGCGCAAAAGUUUGCGUGAUUUAAAGGGCUUCAUUAAGUUCGUGAAUUCGACUAAAUCACGCGCA-----GU-ACUCC-------CAACGGCGGCGCA ---...(((((.(((((.((((((....)))))).))))).)))))............((((...........))))((((.-----((-.....-------.....)).)))). ( -29.30) >DroVir_CAF1 134532 93 - 1 ---ACUGCAUUCUAAGUGGCGCAAAAGUUUGCGUGAUUUAAAGGGCUUCAUUAAGUUCGUGAAUUCGACUAAAUCACGCGCU---------C----------CAACGCUGGCGCA ---(((........))).((((....((((((((((((((..(((.(((((.......))))))))...)))))))))))..---------.----------.)))....)))). ( -26.40) >DroGri_CAF1 120050 96 - 1 ---GCUGCAUUCUAAGUGGCGCAAAAGUUUGCGUGAUUUAAAGGGCUUCAUUAAGUUCGUGAAUUCGACUAAAUCACGCGCU---------CUUC-------GAACGCCGGCGCA ---(((((.(((.(((.(((((....(....)((((((((..(((.(((((.......))))))))...)))))))))))))---------))).-------))).).))))... ( -28.80) >DroWil_CAF1 165826 100 - 1 -------------AUCUGGCGCAAAGGUUUGCGUGAUUUAAAGGGCUUCAUUAAGUUCGUGAAUUCGACUAAAUCACGCGCUCUUUUGU-GCUGCGCGGCAGCAACAGC-GCGCA -------------....((((((((((..(((((((((((..(((.(((((.......))))))))...)))))))))))..)))))))-)))(((((.(.......))-)))). ( -40.90) >DroMoj_CAF1 125271 93 - 1 ---ACUGCAUUCUAAGUGGCGCAAAAGCUUGCGUGAUUUAAAGGGCUUCAUUAAGUUCGUGAAUUCGACUAAAUCACGCGCA---------C----------CAACGCCGGCGCA ---(((........))).((((........((((((((((..(((.(((((.......))))))))...))))))))))((.---------.----------....))..)))). ( -26.00) >DroAna_CAF1 119497 103 - 1 CUGCCUGCAUUCUAAGUGGCGCAAAAGUUUGCGUGAUUUAAAGGGCUUCAUUAAGUUCGUGAAUUCGACUAAAUCACGCGCU-----GUAACUCC-------CAACGGCGGCGCA ..................((((........((((((((((..(((.(((((.......))))))))...))))))))))(((-----((......-------..))))).)))). ( -31.10) >consensus ___ACUGCAUUCUAAGUGGCGCAAAAGUUUGCGUGAUUUAAAGGGCUUCAUUAAGUUCGUGAAUUCGACUAAAUCACGCGCU_________CU_C_______CAACGCCGGCGCA ..................((((....((((((((((((((..(((.(((((.......))))))))...))))))))))).......................)))....)))). (-23.03 = -23.20 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:11 2006