Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 660,625 – 660,754 |
Length | 129 |
Max. P | 0.995849 |
Location | 660,625 – 660,740 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 91.65 |
Mean single sequence MFE | -26.99 |
Consensus MFE | -19.36 |
Energy contribution | -19.36 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.10 |
Mean z-score | -2.02 |
Structure conservation index | 0.72 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564482 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 660625 115 + 23771897 UA---UUAAAUCAUAGAUAAAUGUGGAAACGGCCAAGUAGGCAUCUCUAUAUACAUGAUGAUGCCGAACCAAGCUGCAGCAUCAAUAAAGCAGCUGCAUUUAAUUGCAAUGCCCAUUU ..---.............(((((.(....)(((......((((((((.........)).))))))......((((((............))))))(((......)))...)))))))) ( -27.90) >DroSec_CAF1 16395 118 + 1 UAUUAUUGAAUCAUAGAUAAAUGUGGAAACGGCCAAGUAGGCAUCUCUAUAUACACGAUGAUGCCGAACCAAGCUGCAGCGUCAAUAAAGCAGCUGCAUUUAAUUUCAAUGCCCAUUU ...(((((((...(((((......(....)(((...((.((((((((.........)).))))))..))...)))(((((............))))))))))..)))))))....... ( -27.50) >DroSim_CAF1 16324 115 + 1 UA---UUGAAUCAUAGAUAAAUGUGGAAACGGCCAAGUAGGCAUCUCUAUAUACACGAUGAUGCCGAACCAAGCUGCAGCGUCAAUAAAGCAGCUGCAUUUAAUUUCAAUGCCCAUUU ((---(((((...(((((......(....)(((...((.((((((((.........)).))))))..))...)))(((((............))))))))))..)))))))....... ( -27.30) >DroEre_CAF1 16699 115 + 1 UA---UUAAAUCCUAGAUAAAUCUGGAAAUGGCCAAGUAGUCAUCUCUAUAUAUAAAAUGAUGGCGAACCAAGCUGCAGCAUCAAUAAAGCAGCUGCAUUUAAUUUCAAUGCCCAUUU ..---.......(((((....)))))((((((.((....((((((..............))))))(((......((((((............))))))......)))..)).)))))) ( -25.34) >DroYak_CAF1 17010 115 + 1 CA---UUAAAUCAUAGAUAAAUCUGGAAAUGGCCAGGUAGUCAUCUCUAUAUAGAUGAUGAAGCCGAACCGAGUUGCUGCAUCAAUAAAGCAGCUGCAUUUAAUUUCAAUGCCCAUUU ..---........((((....)))).((((((.(((((.(((((((......)))))))...))).......((.(((((.........))))).))............)).)))))) ( -26.90) >consensus UA___UUAAAUCAUAGAUAAAUGUGGAAACGGCCAAGUAGGCAUCUCUAUAUACACGAUGAUGCCGAACCAAGCUGCAGCAUCAAUAAAGCAGCUGCAUUUAAUUUCAAUGCCCAUUU .......................(((.............((((((..............))))))......((((((............))))))(((((.......))))))))... (-19.36 = -19.36 + -0.00)
Location | 660,625 – 660,740 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 91.65 |
Mean single sequence MFE | -28.94 |
Consensus MFE | -23.14 |
Energy contribution | -23.74 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.08 |
Mean z-score | -1.66 |
Structure conservation index | 0.80 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789857 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 660625 115 - 23771897 AAAUGGGCAUUGCAAUUAAAUGCAGCUGCUUUAUUGAUGCUGCAGCUUGGUUCGGCAUCAUCAUGUAUAUAGAGAUGCCUACUUGGCCGUUUCCACAUUUAUCUAUGAUUUAA---UA ....((((((((((......))))).)))))...((((((((.(((...)))))))))))(((((.(((..((((((((.....)).))))))......))).))))).....---.. ( -29.30) >DroSec_CAF1 16395 118 - 1 AAAUGGGCAUUGAAAUUAAAUGCAGCUGCUUUAUUGACGCUGCAGCUUGGUUCGGCAUCAUCGUGUAUAUAGAGAUGCCUACUUGGCCGUUUCCACAUUUAUCUAUGAUUCAAUAAUA ((((((.((..(((......((((((..(......)..))))))......)))((((((.((.........))))))))....)).))))))...(((......)))........... ( -30.20) >DroSim_CAF1 16324 115 - 1 AAAUGGGCAUUGAAAUUAAAUGCAGCUGCUUUAUUGACGCUGCAGCUUGGUUCGGCAUCAUCGUGUAUAUAGAGAUGCCUACUUGGCCGUUUCCACAUUUAUCUAUGAUUCAA---UA ((((((.((..(((......((((((..(......)..))))))......)))((((((.((.........))))))))....)).))))))...(((......)))......---.. ( -30.20) >DroEre_CAF1 16699 115 - 1 AAAUGGGCAUUGAAAUUAAAUGCAGCUGCUUUAUUGAUGCUGCAGCUUGGUUCGCCAUCAUUUUAUAUAUAGAGAUGACUACUUGGCCAUUUCCAGAUUUAUCUAGGAUUUAA---UA .(((((.((..(((......((((((............))))))......)))....(((((((.......))))))).....)).)))))((((((....))).))).....---.. ( -25.90) >DroYak_CAF1 17010 115 - 1 AAAUGGGCAUUGAAAUUAAAUGCAGCUGCUUUAUUGAUGCAGCAACUCGGUUCGGCUUCAUCAUCUAUAUAGAGAUGACUACCUGGCCAUUUCCAGAUUUAUCUAUGAUUUAA---UG ...((((((((.......))))).(((((.........))))).....(((..((..(((((.(((....))))))))...))..)))....)))..................---.. ( -29.10) >consensus AAAUGGGCAUUGAAAUUAAAUGCAGCUGCUUUAUUGAUGCUGCAGCUUGGUUCGGCAUCAUCAUGUAUAUAGAGAUGCCUACUUGGCCGUUUCCACAUUUAUCUAUGAUUUAA___UA ((((((.((..(((......((((((..(......)..))))))......)))((((((.((.........))))))))....)).)))))).......................... (-23.14 = -23.74 + 0.60)
Location | 660,662 – 660,754 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 94.02 |
Mean single sequence MFE | -22.49 |
Consensus MFE | -19.98 |
Energy contribution | -20.22 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -2.02 |
Structure conservation index | 0.89 |
SVM decision value | 2.62 |
SVM RNA-class probability | 0.995849 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 660662 92 + 23771897 GCAUCUCUAUAUACAUGAUGAUGCCGAACCAAGCUGCAGCAUCAAUAAAGCAGCUGCAUUUAAUUGCAAUGCCCAUUUAGGACUCGGCCCCU .((((...........))))..(((((.((.((((((............))))))(((......)))............))..))))).... ( -23.50) >DroSec_CAF1 16435 92 + 1 GCAUCUCUAUAUACACGAUGAUGCCGAACCAAGCUGCAGCGUCAAUAAAGCAGCUGCAUUUAAUUUCAAUGCCCAUUUAGGACUCGGCCCCU .((((...........))))..(((((.((.((((((............))))))(((((.......))))).......))..))))).... ( -22.50) >DroSim_CAF1 16361 92 + 1 GCAUCUCUAUAUACACGAUGAUGCCGAACCAAGCUGCAGCGUCAAUAAAGCAGCUGCAUUUAAUUUCAAUGCCCAUUUAGGACUCGGCCCCU .((((...........))))..(((((.((.((((((............))))))(((((.......))))).......))..))))).... ( -22.50) >DroEre_CAF1 16736 92 + 1 UCAUCUCUAUAUAUAAAAUGAUGGCGAACCAAGCUGCAGCAUCAAUAAAGCAGCUGCAUUUAAUUUCAAUGCCCAUUUAGGACUCGGCCCCU (((((..............)))))(((.((.((((((............))))))(((((.......))))).......))..)))...... ( -17.04) >DroYak_CAF1 17047 92 + 1 UCAUCUCUAUAUAGAUGAUGAAGCCGAACCGAGUUGCUGCAUCAAUAAAGCAGCUGCAUUUAAUUUCAAUGCCCAUUUAGGACUCGGCCCCU ((((((((....))).))))).(((((.((.(((((((..........)))))))(((((.......))))).......))..))))).... ( -26.90) >consensus GCAUCUCUAUAUACACGAUGAUGCCGAACCAAGCUGCAGCAUCAAUAAAGCAGCUGCAUUUAAUUUCAAUGCCCAUUUAGGACUCGGCCCCU .((((...........))))..(((((.((.((((((............))))))(((((.......))))).......))..))))).... (-19.98 = -20.22 + 0.24)
Location | 660,662 – 660,754 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 94.02 |
Mean single sequence MFE | -29.52 |
Consensus MFE | -24.44 |
Energy contribution | -24.92 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.08 |
Mean z-score | -2.37 |
Structure conservation index | 0.83 |
SVM decision value | 2.24 |
SVM RNA-class probability | 0.990940 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 660662 92 - 23771897 AGGGGCCGAGUCCUAAAUGGGCAUUGCAAUUAAAUGCAGCUGCUUUAUUGAUGCUGCAGCUUGGUUCGGCAUCAUCAUGUAUAUAGAGAUGC ..(((((((((((.....))))..((((......))))(((((............)))))))))))).(((((.((.........))))))) ( -28.70) >DroSec_CAF1 16435 92 - 1 AGGGGCCGAGUCCUAAAUGGGCAUUGAAAUUAAAUGCAGCUGCUUUAUUGACGCUGCAGCUUGGUUCGGCAUCAUCGUGUAUAUAGAGAUGC ..(((((((((((.....))))............((((((..(......)..))))))..))))))).(((((.((.........))))))) ( -28.90) >DroSim_CAF1 16361 92 - 1 AGGGGCCGAGUCCUAAAUGGGCAUUGAAAUUAAAUGCAGCUGCUUUAUUGACGCUGCAGCUUGGUUCGGCAUCAUCGUGUAUAUAGAGAUGC ..(((((((((((.....))))............((((((..(......)..))))))..))))))).(((((.((.........))))))) ( -28.90) >DroEre_CAF1 16736 92 - 1 AGGGGCCGAGUCCUAAAUGGGCAUUGAAAUUAAAUGCAGCUGCUUUAUUGAUGCUGCAGCUUGGUUCGCCAUCAUUUUAUAUAUAGAGAUGA ..(((((((((((.....))))............((((((............))))))..)))))))....(((((((.......))))))) ( -25.80) >DroYak_CAF1 17047 92 - 1 AGGGGCCGAGUCCUAAAUGGGCAUUGAAAUUAAAUGCAGCUGCUUUAUUGAUGCAGCAACUCGGUUCGGCUUCAUCAUCUAUAUAGAGAUGA .(((((((((.((.......(((((.......))))).(((((.........))))).....))))))))))).((((((......)))))) ( -35.30) >consensus AGGGGCCGAGUCCUAAAUGGGCAUUGAAAUUAAAUGCAGCUGCUUUAUUGAUGCUGCAGCUUGGUUCGGCAUCAUCAUGUAUAUAGAGAUGC ..(((((((((((.....))))............((((((..(......)..))))))..))))))).(((((.((.........))))))) (-24.44 = -24.92 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:18 2006