Locus 2428

Sequence ID 3L_DroMel_CAF1
Location 6,845,336 – 6,845,426
Length 90
Max. P 0.983509
window3750

overview

Window 0

Location 6,845,336 – 6,845,426
Length 90
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 71.43
Mean single sequence MFE -24.76
Consensus MFE -13.56
Energy contribution -14.06
Covariance contribution 0.50
Combinations/Pair 1.20
Mean z-score -2.22
Structure conservation index 0.55
SVM decision value 1.95
SVM RNA-class probability 0.983509
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6845336 90 + 23771897
AAGGCCCUACAGGCCUCCUAAGUGCACUGGGAGAAAAAAAAUGUUUAUCUAGGGACAAGCUCCCAAUAAUCUUUCACAGUAGGUGCCGUA--------
..((((((((....((((((.......))))))..................((((.....))))..............))))).)))...-------- ( -26.70)
>DroSec_CAF1 101492 96 + 1
AAGGCCCUAAAGGCCUCCUAAACGCACUGGGAGAAAAAAA--GUCUAUUUAGGAACAAGCUCCCAGAAAUUUUUCAUAGUAUGUGCCCCGCAAGUCUU
.(((((.....))))).......((((((((((.......--.(((.....))).....))))))(((....))).......))))..(....).... ( -23.42)
>DroSim_CAF1 106032 96 + 1
AAGGCCCUACAGGCCUCCUAAAUGCACUGGGAGAAAAAAA--GCCUAUCUAGGGACAAGCUCCCAGAAAUUUUUCAUAGUAGGUGCACCACAAGUCUU
...(((((((((((((((((.......)))))).......--)))).(((.((((.....)))))))...........))))).))............ ( -28.01)
>DroEre_CAF1 117851 75 + 1
AAGGCCCUACAGGCCUCCUAAGUGCACUGCGAGAAAAAAU--GUAUGUGUGGCGAAAAACGCCCAGGAAU----CCAUUUG-----------------
..((((.....))))((((....((((((((........)--))).))))((((.....)))).))))..----.......----------------- ( -20.90)
>consensus
AAGGCCCUACAGGCCUCCUAAAUGCACUGGGAGAAAAAAA__GUCUAUCUAGGGACAAGCUCCCAGAAAUUUUUCAUAGUAGGUGCCCCA________
.(((((.....)))))..........(((((((..........(((.....))).....)))))))................................ (-13.56 = -14.06 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:08 2006