Locus 2427

Sequence ID 3L_DroMel_CAF1
Location 6,844,978 – 6,845,081
Length 103
Max. P 0.694892
window3749

overview

Window 9

Location 6,844,978 – 6,845,081
Length 103
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 82.03
Mean single sequence MFE -19.48
Consensus MFE -15.57
Energy contribution -15.57
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.80
SVM decision value 0.34
SVM RNA-class probability 0.694892
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6844978 103 - 23771897
AAUUAUUUUAUAUGGAAUUCUACGCAUUGCCACGUACGCGCUGGCGACAUGAAACAUGUCUCUAGGCCUCAUCCUCCAGCCU----GCAUCCUCCUUCUGCAAUCCA
............((((............((((((....)).))))((((((...))))))..(((((...........))))----)................)))) ( -21.10)
>DroPse_CAF1 122468 89 - 1
AAUUAUUUUAUAUGGAAUUCUACGCAUUGCCACGUACACGCUGGCGACAUGAAACAUGUCUCUAGGUCUCCUCCCUCGUUCC----UCC---U---CAU--------
.............(((..((((......((((((....)).))))((((((...))))))..))))..)))...........----...---.---...-------- ( -19.10)
>DroEre_CAF1 117476 104 - 1
AAUUAUUUUAUAUGGAAUUCUACGCAUUGCCACGUACACGCUGGCGACAUGAAACAUGUCUCUAGGCCUCAUCCUCCAGCCUUUCUUCGUCCU---CCUGCCAUCCA
............((((....((((........)))).....((((((((((...))))))...((((...........))))...........---...)))))))) ( -19.90)
>DroYak_CAF1 108015 100 - 1
AAUUAUUUUAUAUGGAAUUCUACGCAUUGCCACGUACACGCUGGCGACAUGAAACAUGUCUCUAGGCCUCAUCCUCCAGCCU----UCAACCG---CCUGCAAGCCA
............(((.....((((........))))...((.(((((((((...))))))...((((...........))))----......)---)).))...))) ( -21.20)
>DroAna_CAF1 114929 91 - 1
AAUUAUUUUAUAUGGAAUUCUACGCAUUGCCACGUACACGCUGGCGACAUGAAACAUGUCUCUAGGUCUCUCCC--CACUCC----UCCU------CC-GCAGU---
.............(((..((((......((((((....)).))))((((((...))))))..))))..)))...--......----....------..-.....--- ( -16.50)
>DroPer_CAF1 122492 89 - 1
AAUUAUUUUAUAUGGAAUUCUACGCAUUGCCACGUACACGCUGGCGACAUGAAACAUGUCUCUAGGUCUCCUCCCUCGUUCC----UCC---U---CAU--------
.............(((..((((......((((((....)).))))((((((...))))))..))))..)))...........----...---.---...-------- ( -19.10)
>consensus
AAUUAUUUUAUAUGGAAUUCUACGCAUUGCCACGUACACGCUGGCGACAUGAAACAUGUCUCUAGGCCUCAUCCUCCAGCCC____UCCU__U___CCUGCAAU___
..............((..((((......((((((....)).))))((((((...))))))..))))..))..................................... (-15.57 = -15.57 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:07 2006