Locus 2426

Sequence ID 3L_DroMel_CAF1
Location 6,838,811 – 6,838,904
Length 93
Max. P 0.922254
window3748

overview

Window 8

Location 6,838,811 – 6,838,904
Length 93
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 77.61
Mean single sequence MFE -18.13
Consensus MFE -14.99
Energy contribution -15.22
Covariance contribution 0.22
Combinations/Pair 1.05
Mean z-score -1.54
Structure conservation index 0.83
SVM decision value 1.15
SVM RNA-class probability 0.922254
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6838811 93 - 23771897
-GGGAGACA-----------ACAAUGCCACAUCAUUCUGAUGUUUAAAAAUUUGAUUUAAACACUUUAAAUUGGAUUAUGCUGUAGGCAAAUUU---UCUUCCGUUCA
-((((((.(-----------(...(((((((((.....))))).....((((..((((((.....))))))..))))........))))..)).---))))))..... ( -24.30)
>DroVir_CAF1 124924 74 - 1
--------U-----------ACAAUGCCACUUCGUUCUGAUGUUUCA-AAUUUGAUUUAAACACUUUAAAUUGGAUUAUGCUGUAGGCAAAUUU--------------
--------.-----------....((((((..(((..(((....)))-((((..((((((.....))))))..)))))))..)).)))).....-------------- ( -14.50)
>DroPse_CAF1 114872 108 - 1
AGAGAGACAACAAUAGUCGUACAAUGCCACGUCGUUGUGAUGUUUAAAAAUUUGAUUUAAACACUUUAAAUUGGAUUAUCCUGUAGGCAAAUUUACUUCUUCCGUUCC
.(((((((.......)))(((...(((((((((.....))))).....((((..((((((.....))))))..))))........))))....))).))))....... ( -20.00)
>DroGri_CAF1 109580 74 - 1
--------U-----------ACAAUGCCACUUCGUUCUGAUGUUUCA-AAUUUGAUUUAAACACUUUAAAUUGGAUUAUUCUGUAGGCAAAUUU--------------
--------.-----------....((((.........(((....)))-((((..((((((.....))))))..))))........)))).....-------------- ( -13.60)
>DroAna_CAF1 107281 90 - 1
----AGAUA-----------ACAAUGCCACAUCGUUGUGAUGUUUAAAAAUUUGAUUUAAACACUUUAAAUUGGAUUAUCCUGUAGGCAAAUUU---UCUUCCGUUCA
----.....-----------....(((((((((.....))))).....((((..((((((.....))))))..))))........)))).....---........... ( -16.40)
>DroPer_CAF1 114880 108 - 1
AGAGAGACAACAAUAGUCGUACAAUGCCACGUCGUUGUGAUGUUUAAAAAUUUGAUUUAAACACUUUAAAUUGGAUUAUCCUGUAGGCAAAUUUACUUCUUCCGUUCC
.(((((((.......)))(((...(((((((((.....))))).....((((..((((((.....))))))..))))........))))....))).))))....... ( -20.00)
>consensus
____AGACA___________ACAAUGCCACAUCGUUCUGAUGUUUAAAAAUUUGAUUUAAACACUUUAAAUUGGAUUAUCCUGUAGGCAAAUUU___UCUUCCGUUC_
........................(((((((((.....))))).....((((..((((((.....))))))..))))........))))................... (-14.99 = -15.22 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:06 2006