| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,838,245 – 6,838,346 |
| Length | 101 |
| Max. P | 0.915960 |
| Location | 6,838,245 – 6,838,346 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 75.10 |
| Mean single sequence MFE | -22.32 |
| Consensus MFE | -7.56 |
| Energy contribution | -7.40 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.34 |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.915960 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6838245 101 - 23771897 -AACAAAACCACGGAA-AAAU-ACCCACAAGUGGGGAGGCUAUGAGUCGGAAUUUCGAAUUUCAAAUACCUCGCAAAAUUAUGAGGAC--GAAAGGGGUAAACAAU-- -...............-...(-((((....((((((.(((.....)))(((((.....))))).....)))))).............(--....))))))......-- ( -22.40) >DroSec_CAF1 94557 101 - 1 -AACAAAACCACGGAA-AAAU-ACCCACAAGUGGGGUAGCUAUAAGCCGGAAUUUAGACUAUCAGAUACCUCGCAAAGUUAUGAGGAC--GAAAGGGGUAAAUAAU-- -...............-...(-((((....((((((((.((...((.(........).))...)).)))))))).............(--....))))))......-- ( -21.30) >DroSim_CAF1 97357 101 - 1 -AACAAAACCACGGAA-AAAU-ACCCACAAGUGGGGUAGCUAUAAGCCGGAAUUUAGACUAUCAGAUACCUCGCAAAAUUAUGAGAAC--GAAAGGGGUAAAUAAU-- -...............-...(-((((....((((((((.((...((.(........).))...)).)))))))).............(--....))))))......-- ( -21.30) >DroEre_CAF1 110449 103 - 1 AAACAAAACCACGGAAAAAAU-ACCCACAAGUGGGGAGGCUAAGAGCCGCAAUUUUGACUAUCAGCUACCUCGCAAAAUCAUGUGAUU--AAAAGGGGUAAAAAAA-- ....................(-((((....((((((.((((...((.((......)).))...)))).))))))..((((....))))--.....)))))......-- ( -23.70) >DroYak_CAF1 100664 104 - 1 -AACAAAACCACCGAAAAAAU-ACCCACAAGUGGGGAGGCUCUAAGCCGCAAUUUUGACUAUCAGAUACCUCGCAAAAUCAUGUGAUU--AAAAGGGGUAAAAAAAAU -...................(-((((....((((((.(((.....))).....((((.....))))..))))))..((((....))))--.....)))))........ ( -24.10) >DroAna_CAF1 106702 94 - 1 -AACAAAAUCACAAAA-AAAUGAAAAACAAGCCAAGAAUC--CUGGC-------CCGACUAUGUGGUACUUGGCAU-UUCAUUUUUUUGCCAAAGAG--AAAUAAAAG -..........(((((-((((((((.....((((((.(((--((((.-------....))).).))).)))))).)-))))))))))))........--......... ( -21.10) >consensus _AACAAAACCACGGAA_AAAU_ACCCACAAGUGGGGAAGCUAUAAGCCGGAAUUUAGACUAUCAGAUACCUCGCAAAAUCAUGAGAAC__GAAAGGGGUAAAUAAA__ ......................((((....((((((................................))))))....((....)).........))))......... ( -7.56 = -7.40 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:05 2006