Locus 2424

Sequence ID 3L_DroMel_CAF1
Location 6,836,779 – 6,836,870
Length 91
Max. P 0.887096
window3746

overview

Window 6

Location 6,836,779 – 6,836,870
Length 91
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 90.84
Mean single sequence MFE -31.99
Consensus MFE -28.32
Energy contribution -28.35
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -1.74
Structure conservation index 0.89
SVM decision value 0.94
SVM RNA-class probability 0.887096
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6836779 91 - 23771897
CGAACGCGGCUUUUGGGCAAAUGAAUUGGCCGCGUUUGUUUCGGGCUUAGCGGGAAUGUCUUCGACGAGGCAUAAAUUGCCCCAGAA-A--UGU
(((((((((((..(...(....).)..)))))))))))(((((((....((((..(((((((....)))))))...))))))).)))-)--... ( -31.50)
>DroSec_CAF1 92960 92 - 1
CGAACACGGCUUUUGGGCAAAUGAAUUGGCCGCGUUUGUUUCGGGCUUAGCGGGAAUGUCUUCGACGAGGCAUAAAUUGCCCCAGAAAA--AGG
(((((.(((((..(...(....).)..))))).)))))(((((((....((((..(((((((....)))))))...))))))).)))).--... ( -26.30)
>DroSim_CAF1 95760 92 - 1
CGAACGCGGCUUUUGAACAAAUGAAUUGGCCGCGUUUGUUUCGGGCUUAGCGGGAAUGUCUUCGACGAGGCAUAAAUUGCCCCAGAAAA--AGG
(((((((((((..(..........)..)))))))))))(((((((....((((..(((((((....)))))))...))))))).)))).--... ( -31.60)
>DroEre_CAF1 108944 91 - 1
CGAACGCGGCUUUUGGGCAAAUGAAUUGGCCGCGUUUGUUUCGGGCUUAGCGGAAAUGUCUUCGACGAGGCAUAAAUUGCCCAAAAA-G--GGC
(((((((((((..(...(....).)..)))))))))))(((((.......)))))(((((((....))))))).....((((.....-)--))) ( -31.20)
>DroYak_CAF1 99190 91 - 1
CGAACGCGGCUUUUGGGCAAAUGAAUUGGCCGCGUUUGUUUCGGGCUUAGCGGGAAUGUCUUCGACGAGGCAUAAAUUGCCCAAAAA-G--GGU
(((((((((((..(...(....).)..)))))))))))....((((.........(((((((....))))))).....)))).....-.--... ( -29.84)
>DroAna_CAF1 104857 93 - 1
CGAACGCGGCUU-UGGGCAAAUGAAUUGGCCGCGUUUGUCUCGGGCUUAGUGGGAAUGCCUUCGACGAGGCAUAAAUAGCCCACGGAGUCGGGC
(((((((((((.-....(....)....)))))))))))..((.(((((.(((((.(((((((....)))))))......))))).))))).)). ( -41.50)
>consensus
CGAACGCGGCUUUUGGGCAAAUGAAUUGGCCGCGUUUGUUUCGGGCUUAGCGGGAAUGUCUUCGACGAGGCAUAAAUUGCCCAAGAA_A__GGC
(((((((((((................)))))))))))....((((.........(((((((....))))))).....))))............ (-28.32 = -28.35 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:04 2006