Locus 2423

Sequence ID 3L_DroMel_CAF1
Location 6,812,541 – 6,812,635
Length 94
Max. P 0.523781
window3745

overview

Window 5

Location 6,812,541 – 6,812,635
Length 94
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 76.02
Mean single sequence MFE -17.16
Consensus MFE -9.34
Energy contribution -9.26
Covariance contribution -0.08
Combinations/Pair 1.20
Mean z-score -1.68
Structure conservation index 0.54
SVM decision value -0.02
SVM RNA-class probability 0.523781
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6812541 94 - 23771897
AAUUCAAUUUUAUCCACAUAACCAUAGAUGAUCAUC-AAAUAUGACUAGAGUUUUCUUGCUGUGCAG-GACUCUACUGCCAGUUAGCUGGCUUCUU
......................((((..((.....)-)..))))..(((((...((((((...))))-)))))))..(((((....)))))..... ( -20.90)
>DroSec_CAF1 73346 93 - 1
AAUUAAUUUUUAU--UCAUAACCAAAGAAACGCCUC-CAAAUUAACUACAAUUUUCUUACUGUGCAGAGACUCUCCUGCCAGCUUGCUGGCUUCUU
.............--.........(((((..(((..-((((((......))))......(((.((((.(.....))))))))..))..)))))))) ( -13.10)
>DroSim_CAF1 75996 95 - 1
AAUACAAUUUUAUCAUCAUAACAAUAGGAGCUCAUC-AAAUAUGACUAAAGUUUUCUUGCUGUGCAGAGACUCUCCUGCCAGUUUGCUGGCUUCUU
.........................((((((.((.(-((....(((....))).....((((.((((.(.....)))))))))))).)))))))). ( -18.60)
>DroEre_CAF1 87265 96 - 1
AAUUCAUUUCUAUCCAUAUAACCAAAGAAGCUUCUCUUAAAUCUACUACAAUUUUCUUGCUAUGCAGGAACUCUCCUGCCAGCUGGCUGGCAUAUU
........................((((......))))...............(((((((...)))))))......((((((....)))))).... ( -17.00)
>DroYak_CAF1 78972 88 - 1
AAUUUAAU-------AUAAAACCAAAAAAGCU-CUGAAGAACAUACUACAAUUUUCUUCCUGUGCAGAGACUCUCCUGCCAGUUGGCUGGCUUCUU
........-------..............((.-(.((((((.((......)).))))))..).))............(((((....)))))..... ( -16.20)
>consensus
AAUUCAAUUUUAUC_ACAUAACCAAAGAAGCUCCUC_AAAAAUGACUACAAUUUUCUUGCUGUGCAGAGACUCUCCUGCCAGUUGGCUGGCUUCUU
....................................................(((((........))))).......(((((....)))))..... ( -9.34 =  -9.26 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:03 2006