Locus 2422

Sequence ID 3L_DroMel_CAF1
Location 6,811,377 – 6,811,471
Length 94
Max. P 0.500000
window3744

overview

Window 4

Location 6,811,377 – 6,811,471
Length 94
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 85.04
Mean single sequence MFE -26.58
Consensus MFE -18.85
Energy contribution -18.85
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.23
Structure conservation index 0.71
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6811377 94 - 23771897
AUCUACACCGGAGCAUAUAGUGACACAUUUUCCGCCCCUUGUAGGCGCGAUAUGCGCAUAAUUAAUGAGCCUU-UUAUGGUUUAUUGAACCGCAA---
..(((((..((.((....((((...))))....))))..)))))((((.....))))....((((((((((..-....)))))))))).......--- ( -26.10)
>DroVir_CAF1 100706 83 - 1
--------CGCUGC--AGAGUGACACAUUUUCCGGCCC-UGUAGGCGCGAUAUGCGCAUAAUUAAUGAGCCUU-UUAUGGUUUAUUGAACCGCAA---
--------.((((.--((((((...)))))).))))..-((..(((((.....))))....((((((((((..-....)))))))))).)..)).--- ( -25.40)
>DroGri_CAF1 86311 83 - 1
--------CGCAGC--AGAGUGACACAUUUUCCGCCCC-UGUAGGCGCGAUACGCGCAUAAUUAAUGAGCCUU-UUAUGGUUUAUUGAACCGCAA---
--------.((.((--((.(((..........)))..)-)))..(((((...)))))....((((((((((..-....))))))))))...))..--- ( -24.60)
>DroWil_CAF1 112145 79 - 1
------------------AGUGACACAUUUUCCGCCCC-UGUAGGCGCGAUAUGCGCAUAAUUAAUGAGCCUUUUUAUGGUUUAUUGAACCGCACCGC
------------------.(((.(.(((..((((((..-....)))).)).))).))))..((((((((((.......)))))))))).......... ( -20.80)
>DroMoj_CAF1 92765 91 - 1
GGCUACAGCGUUGC--AGAGUGACACAUUUUCCGGGCC-UGUAGGCGCGAUAUGCGCAUAAUUAAUGAGCCUU-UUAUGGUUUAUUGAACCGCAA---
((((((((.((((.--((((((...)))))).).))))-)))))((((.....))))....((((((((((..-....)))))))))).))....--- ( -28.10)
>DroAna_CAF1 84143 93 - 1
UUCUACACCGGGGCGCAUAGUGACACAUUUUCCGCCCC-UGUAGGCGCGAUAUGCGCAUAAUUAAUGAGCCUU-UUAUGGUUUAUUGAACCGCAA---
..(((((..((((((...((((...))))...))))))-)))))((((.....))))....((((((((((..-....)))))))))).......--- ( -34.50)
>consensus
________CGCAGC__AGAGUGACACAUUUUCCGCCCC_UGUAGGCGCGAUAUGCGCAUAAUUAAUGAGCCUU_UUAUGGUUUAUUGAACCGCAA___
...................(((......................((((.....))))....((((((((((.......))))))))))..)))..... (-18.85 = -18.85 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:02 2006