| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,810,586 – 6,810,694 |
| Length | 108 |
| Max. P | 0.597943 |
| Location | 6,810,586 – 6,810,694 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 76.34 |
| Mean single sequence MFE | -26.16 |
| Consensus MFE | -16.78 |
| Energy contribution | -16.89 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.597943 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6810586 108 + 23771897 AACCAGAAACCUGCUCAUGUUUGAGUUGCGUCUGCAGUUUUAUCAACGCAACGACAUCAACUUAAAAGCACUCAGGGGGCUCUUGCGAAUCCCCCGCAACAUUCCUUU- .....(((...(((.....(((((((((.((((((.(((.....))))))..)))..)))))))))........(((((.((....))..))))))))...)))....- ( -26.30) >DroVir_CAF1 99392 91 + 1 UAC-CAGGACCUGGCCAUGUUUGAGUUGCGUCUGCAGUUUUAUCAACGCAACGACAUCAGCUUAAAGGCACUCAAGGGGCUGG-CCAUA--ACCC-------------- ..(-(((..(((.(((...(((((((((.((((((.(((.....))))))..)))..)))))))))))).....)))..))))-.....--....-------------- ( -27.40) >DroGri_CAF1 85286 98 + 1 UACCCAGGACCUGGCCAUGUUUGAGUUGAGUCUGCAGUUUUAUCAACGCAACGACAUCAGCUUAAAAGCACUCAAGGGGCUGGUCCAUA--A--AGCA-------GGAA ......(((((.((((...((((((((((((((((.(((.....))))))..))).)))(((....)))))))))).)))))))))...--.--....-------.... ( -31.20) >DroWil_CAF1 111313 82 + 1 AAUACAGGACCUGCCCAUGUUUGAGUUGCGUCUGCAGUUUUAUCAACGCAACAACAUCAACUUAAAAGCACUCAGGGGGCUG--------------------------- ....(((..((((......(((((((((.((.(((.(((.....))))))...))..)))))))))......))))...)))--------------------------- ( -17.70) >DroMoj_CAF1 91846 98 + 1 UAG-CAGAACCUGCCCAUGUUUGAGUUGCGUCUGCAGUUUUAUCAACGCAACGACAUCAGCUUAAAAGCACUCAAGGGGCUGC-CCAUG--CCAAGGG-------GGAA ..(-(((..(((.......(((((((((.((((((.(((.....))))))..)))..)))))))))........)))..))))-((...--.....))-------.... ( -26.16) >DroAna_CAF1 83246 95 + 1 AACCAGAAACCUGCUCAUGUUUGAGUUGCGUCUGCAGUUUUAUCAACGCAACGACAUCAACUUAAAAGCACUCAGGGGGCUGAUGU----CCCCCCGGC---------- ..((.......((((....(((((((((.((((((.(((.....))))))..)))..)))))))))))))....((((((....))----))))..)).---------- ( -28.20) >consensus AACCCAGAACCUGCCCAUGUUUGAGUUGCGUCUGCAGUUUUAUCAACGCAACGACAUCAACUUAAAAGCACUCAAGGGGCUGG_CCAUA__CCCCG_____________ ....(((..(((.......(((((((((.((((((.(((.....))))))..)))..)))))))))........)))..)))........................... (-16.78 = -16.89 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:01 2006