Locus 2420

Sequence ID 3L_DroMel_CAF1
Location 6,809,833 – 6,809,933
Length 100
Max. P 0.791407
window3742

overview

Window 2

Location 6,809,833 – 6,809,933
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 72.58
Mean single sequence MFE -18.03
Consensus MFE -10.82
Energy contribution -9.93
Covariance contribution -0.88
Combinations/Pair 1.19
Mean z-score -1.60
Structure conservation index 0.60
SVM decision value 0.59
SVM RNA-class probability 0.791407
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6809833 100 + 23771897
CUGUCGUCUGAGUAUAUGCAAUGAAUAUUUUUCGCAAUCUAUUGUGCACUCAGGAGAACACUGAACUCGAUGACACUGAAACAUAAUGUUCAAAUAUAAA
.(((((((.((((...(((...(((.....)))((((....))))))).((((.......))))))))))))))).((((........))))........ ( -21.30)
>DroEre_CAF1 84538 95 + 1
CUGCCGUCUAAAUAUAUGCAAUAAAUAU----UGCAAUCUAUUGCGCACUCGAGAUAAAACUGAACUCGAUGGCACUGAAACUAAAUAGUGCCAUA-AAA
.(((.((...((((..((((((....))----))))...))))))))).(((((...........)))))((((((((........))))))))..-... ( -21.40)
>DroYak_CAF1 76199 82 + 1
CUGUCGUCUGACUAUAUGCAAUGAAUAUUUUUUGCAAUCUAUUGUGCAA-----------------CCGAUGACACUGAAACUAAAUGAUCCAAUA-AAA
.(((((((((((.((((((((..........)))))...))).)).)).-----------------..))))))).....................-... ( -11.40)
>consensus
CUGUCGUCUGAAUAUAUGCAAUGAAUAUUUUUUGCAAUCUAUUGUGCACUC__GA_AA_ACUGAACUCGAUGACACUGAAACUAAAUGAUCCAAUA_AAA
.(((((((.....((((.......))))....(((((....)))))......................)))))))......................... (-10.82 =  -9.93 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:00 2006