Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 659,413 – 659,503 |
Length | 90 |
Max. P | 0.811405 |
Location | 659,413 – 659,503 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 77.08 |
Mean single sequence MFE | -19.57 |
Consensus MFE | -16.15 |
Energy contribution | -17.23 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.00 |
Mean z-score | -1.10 |
Structure conservation index | 0.83 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 659413 90 + 23771897 ------------CAUUCCCACUUCAUUUCCAUUCACAACAUGAGCAACUGUUUCGGUUCUCGUGUGACUCUCCGGAUUCCCGAUUCUCGCG-----ACGCGCUGAGA ------------.........................(((((((.(((((...)))))))))))).......(((....)))..(((((((-----...))).)))) ( -19.90) >DroSec_CAF1 15170 90 + 1 ------------CAUUCCCACUUCAUUUCCAUUCCCAACAUGAGCAACUGUUUCGGUUCUCGUGUGACUCUCCGGAUUCCCGAUUCUCGCG-----ACGCGCUGAGA ------------.........................(((((((.(((((...)))))))))))).......(((....)))..(((((((-----...))).)))) ( -19.90) >DroSim_CAF1 15100 90 + 1 ------------CAUUCCCACUUCAUUUCCAUUCCCAACAUGAGCAACUGUUUCGGUUCUCGUGUGACUCUCCGGAUUCCCGAUUCUCGCG-----ACGCGCUGAGA ------------.........................(((((((.(((((...)))))))))))).......(((....)))..(((((((-----...))).)))) ( -19.90) >DroEre_CAF1 15507 101 + 1 -ACUCCCACUUCCAUUCCCACUUGAUUUCCAUUCCCAACAUGAGCAACUGUUUCGGUUCUCGUGUGACUCUCCGGAUUCCCGAUUCUCGCG-----ACGCGCUGAGA -....................................(((((((.(((((...)))))))))))).......(((....)))..(((((((-----...))).)))) ( -19.90) >DroYak_CAF1 15727 102 + 1 AAUUCCCAUUCCCAUUCCCACU-----UCCAUUCCCAACAUGAGCAACUGUUUCGGUUCUCGUGUGACUCUCCGGAUUCCCGAUUCUCGCGUCGCAACGCGCUGAGA ......................-----..........(((((((.(((((...))))))))))))..(((..(((....))).....(((((....)))))..))). ( -22.80) >DroPer_CAF1 21746 69 + 1 ------------UUACCCGAUUCCAUUCCCAGUCC---CAUGAGCAACUGUUGUGGUUCUCGUGUGAUUCUCUCGU-----------------------CUCUGAGA ------------((((.(((..((((...((((..---(....)..))))..))))...))).)))).((((....-----------------------....)))) ( -15.00) >consensus ____________CAUUCCCACUUCAUUUCCAUUCCCAACAUGAGCAACUGUUUCGGUUCUCGUGUGACUCUCCGGAUUCCCGAUUCUCGCG_____ACGCGCUGAGA .....................................(((((((.((((.....)))))))))))...(((((((....))).....((((......))))..)))) (-16.15 = -17.23 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:15 2006