Locus 2418

Sequence ID 3L_DroMel_CAF1
Location 6,804,276 – 6,804,375
Length 99
Max. P 0.774831
window3738

overview

Window 8

Location 6,804,276 – 6,804,375
Length 99
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 78.35
Mean single sequence MFE -32.93
Consensus MFE -18.50
Energy contribution -18.87
Covariance contribution 0.36
Combinations/Pair 1.10
Mean z-score -1.92
Structure conservation index 0.56
SVM decision value 0.54
SVM RNA-class probability 0.774831
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6804276 99 + 23771897
UGCUGCUG-CUGUUGUGCUG---UCCCGAACAAAACAUCUUCGAGUCUGGCC-GGGCUAGACUCUUUGGUAGCCAAAGUUUAGACAGACCAAACAAUUCGUCAA---------------
.((....)-)((((...(((---((..((((...........(((((((((.-..)))))))))(((((...))))))))).)))))....)))).........--------------- ( -28.80)
>DroPse_CAF1 79088 110 + 1
UGUUGCUGGCUGUUG-GCUGUUGGC--------UGCAUCUUCGAGUCUGGUUAGGACUAGACUCUUUGGUAGCCAAAGUUUAGACAGACCAAACAAUUCGUCAACGAACGCAGAGAGGG
..((((((((((((.-(((.(((((--------(((......(((((((((....)))))))))....)))))))))))...))))).))).....((((....)))).))))...... ( -41.90)
>DroEre_CAF1 78666 98 + 1
UGAUGCUG-CCGCUGUGCUG---UGCCGCACAAAACAUCUUCG-GUCUGGCC-GGGCUAGACUCUUUGGUAGCCAAAGUUUAGACAGACCAAACAAUUCGUCAA---------------
((((((((-((..(((((..---....)))))..........(-(((((((.-..))))))))....))))))....((((.(......))))).....)))).--------------- ( -28.30)
>DroYak_CAF1 70144 102 + 1
UGAUGCUG-CUAUUGUGCUGUUGUCCCGCACAAAACAUCUUCGAGUCUGGCC-GAGCUAGACUCUUUGGUAGCCAAAGUUUAGACAGACCAAACAAUUCGUCAA---------------
((((((((-(((((((((.........)))))).........(((((((((.-..)))))))))..)))))))....((((.(......))))).....)))).--------------- ( -30.80)
>DroAna_CAF1 76094 98 + 1
CCAUGUUU-CUGUUGUGUUG---GGCCG-GCAAAACAUCUUCGAGUCUGGCC-GGACUAGACUCUUUGGUAGCCAAAGUUUAGACAGACCAAACAAUUCGUCAA---------------
...((...-..(((((.(((---(.(((-((...((........))...)))-)).(((((((..((((...))))))))))).....)))))))))....)).--------------- ( -25.90)
>DroPer_CAF1 79051 110 + 1
UGUUGCUGGCUGUUG-GCUGUUGGC--------UGCAUCUUCGAGUCUGGUUAGGACUAGACUCUUUGGUAGCCAAAGUUUAGACAGACCAAACAAUUCGUCAACGAACGCAGAGAGGG
..((((((((((((.-(((.(((((--------(((......(((((((((....)))))))))....)))))))))))...))))).))).....((((....)))).))))...... ( -41.90)
>consensus
UGAUGCUG_CUGUUGUGCUG___GCCCG_ACAAAACAUCUUCGAGUCUGGCC_GGACUAGACUCUUUGGUAGCCAAAGUUUAGACAGACCAAACAAUUCGUCAA_______________
.........(((((..(((.......................(((((((((....))))))))).((((...)))))))...)))))................................ (-18.50 = -18.87 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:56 2006