Locus 2413

Sequence ID 3L_DroMel_CAF1
Location 6,785,380 – 6,785,476
Length 96
Max. P 0.955802
window3730

overview

Window 0

Location 6,785,380 – 6,785,476
Length 96
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 81.55
Mean single sequence MFE -12.65
Consensus MFE -11.95
Energy contribution -11.70
Covariance contribution -0.25
Combinations/Pair 1.14
Mean z-score -2.07
Structure conservation index 0.94
SVM decision value 1.46
SVM RNA-class probability 0.955802
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6785380 96 - 23771897
ACUCAAAAAUCAAACAAAUACC------AAAUAAA------AAAUAAAAUAUACAAGAGACGCGCGCCACAA-ACGCUGCGUGUAUCGCUUAAAUAAUUAAUAUUUUAA
......................------.......------...((((((((....((.((((((((.....-..)).)))))).))...(((....))))))))))). ( -12.90)
>DroSec_CAF1 46171 96 - 1
ACUCAAAAAUCAAACAAAUACC------AAAUAAA------AAAUAAAAUAUACAAGAGACGCGCGCCACAA-AUGCUGCGUGUAUCGCUUAAAUAAUUAAUAUUUUAA
......................------.......------...((((((((....((.(((((((.((...-.)).))))))).))...(((....))))))))))). ( -12.80)
>DroSim_CAF1 49706 96 - 1
ACUCAAAAAUCAAACAAAUACC------AAAUAAA------AAAUAAAAUAUACAAGAGACGCGCGCCACAA-AUGCUGCGUGUAUCGCUUAAAUAAUUAAUAUUUUAA
......................------.......------...((((((((....((.(((((((.((...-.)).))))))).))...(((....))))))))))). ( -12.80)
>DroYak_CAF1 49821 109 - 1
ACUCAAAAAUCAAACAAAUGCCAACUCCAAAUAAAAAGAUAAAAUAAAAUAUACAAGAGACGCGCGCCACAAAAUGCUGUGUGUAUCGCUGAAAUAAUUAAUAUUUUAA
........................................................((.((((((((........)).)))))).))..(((((((.....))))))). ( -11.40)
>DroMoj_CAF1 63502 82 - 1
--------UUUAUACAAAAAUU------A---AGA------AAAUAAAAUAUACAAGAGACGCGUGCCGCA----GCUGCGUGUAUUGCUUAAAUAAUUAAUAUUUUAA
--------..............------.---...------...((((((((.(((...((((((((....----)).)))))).)))..(((....))))))))))). ( -10.80)
>DroPer_CAF1 58203 83 - 1
A-----------CAAAAAUAUC------AA--AAA------GUAUAAAAUAUACAAGAGACGCGCGCCAAAA-AUGCUGCGUGUAUCGCUUAAAUAAUUAAUAUUUUAA
.-----------..(((((((.------..--...------(((((...)))))..((.(((((((.((...-.)).))))))).)).............))))))).. ( -15.20)
>consensus
ACUCAAAAAUCAAACAAAUACC______AAAUAAA______AAAUAAAAUAUACAAGAGACGCGCGCCACAA_AUGCUGCGUGUAUCGCUUAAAUAAUUAAUAUUUUAA
............................................((((((((....((.((((((((........)).)))))).))...(((....))))))))))). (-11.95 = -11.70 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:49 2006