Locus 2410

Sequence ID 3L_DroMel_CAF1
Location 6,782,027 – 6,782,127
Length 100
Max. P 0.645930
window3723

overview

Window 3

Location 6,782,027 – 6,782,127
Length 100
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 80.19
Mean single sequence MFE -17.22
Consensus MFE -12.20
Energy contribution -12.37
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.32
Structure conservation index 0.71
SVM decision value 0.23
SVM RNA-class probability 0.645930
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6782027 100 - 23771897
UUAUUUAUCGUUUAAUUAACUCAACCCGCAAUUAUUUCAAUUAAAAAUGCUGCUCAGCCGCCCGGUC--------GGCUGAGUAAUGCACACAC---UG------UUCCAACUCAAC
...............................................(((((((((((((......)--------)))))))))..))).....---..------............ ( -18.90)
>DroPse_CAF1 54622 103 - 1
UUAUUUAUCGUUUAAUUAACUCAACCCGCAAUUAUUUCAAUUAAAAAUGCUGCUCAGCCGUC--------------GCUGAGUAAUGCACACAACACAGACACAGACACAGAUAUAG
.....(((((((.....)))...........................(((((((((((....--------------))))))))..))).....................))))... ( -15.60)
>DroWil_CAF1 73190 96 - 1
UUAUUUAUCGUUUAAUUAACUCAAUCCGCAAUUAUUUCAAUUAAAAAUGCAGCUCAGCCGUC--------------GCUGAGUAAUGCACAAAC-ACAG------AGACAAUGCAAU
...........................(((.((.((((.........(((((((((((....--------------)))))))..)))).....-...)------))).)))))... ( -17.73)
>DroYak_CAF1 46252 103 - 1
UUAUUUAUCGUUUAAUUAACUCAACCCGCAAUUAUUUCAAUUAAAAAUGCUGCUCAGCCGCCCGGUCGGUUGCUCGGCUGAGUAAUGCACACAC---AG------UUUC-----GAC
.......((((((((((.....................)))))))..(((((((((((((.((....)).....))))))))))..))).....---..------...)-----)). ( -20.20)
>DroAna_CAF1 53102 97 - 1
UUAUUUAUCGUUUAAUUAACUCAACCCGCAAUUAUUUCAAUUAAAAAUGCUGCUCAGCCGCC--GUC---------GCUGAGUAAUGCACACAG---AU------AUCCACAACAAA
.....(((((((.....)))...........................(((((((((((....--...---------))))))))..)))....)---))------)........... ( -15.30)
>DroPer_CAF1 54375 103 - 1
UUAUUUAUCGUUUAAUUAACUCAACCCGCAAUUAUUUCAAUUAAAAAUGCUGCUCAGCCGUC--------------GCUGAGUAAUGCACACAACACAGACACAGACACAGAUAUAG
.....(((((((.....)))...........................(((((((((((....--------------))))))))..))).....................))))... ( -15.60)
>consensus
UUAUUUAUCGUUUAAUUAACUCAACCCGCAAUUAUUUCAAUUAAAAAUGCUGCUCAGCCGCC______________GCUGAGUAAUGCACACAC___AG______AUACAAAUCAAC
...............................................(((((((((((..................))))))))..)))............................ (-12.20 = -12.37 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:42 2006