Locus 241

Sequence ID 3L_DroMel_CAF1
Location 657,677 – 657,777
Length 100
Max. P 0.803909
window359

overview

Window 9

Location 657,677 – 657,777
Length 100
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 92.13
Mean single sequence MFE -20.65
Consensus MFE -17.52
Energy contribution -17.68
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.92
Structure conservation index 0.85
SVM decision value 0.63
SVM RNA-class probability 0.803909
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 657677 100 + 23771897
UCUGCACAUUUAUGCACAUAUAAUGUCUCGCACCUCGACGAUAAGCAAAAGUCAAAAUUUUGCAACUACCUGUUGGCUGUUGUCAACAUAUCAUUUGUCA
..(((((((((((....))).)))))...)))....(((((...((((((.......)))))).......(((((((....)))))))......))))). ( -21.50)
>DroSec_CAF1 13457 100 + 1
UCUGCACAUUUAUGCACGUAUAAUGUCUCGCACCUCGACGAUAAGCAAAAGUCAAAAUUUUGCAACUACCUGUUGGCUGUUGUCAACAUAUCAUUUGUCA
..((((((((.(((....))))))))...)))....(((((...((((((.......)))))).......(((((((....)))))))......))))). ( -21.90)
>DroSim_CAF1 13401 100 + 1
UCUGCACAUUUAUGCACGUAUAAUGUCUCGCACCUCGACGAUAAGCAAAAGUCAAAAUUUUGCAACUACCUGUUGGCUGUUGUCAACAUAUCAUUUGUCA
..((((((((.(((....))))))))...)))....(((((...((((((.......)))))).......(((((((....)))))))......))))). ( -21.90)
>DroEre_CAF1 13768 100 + 1
UCUGCACAUUUAUUCACGUAUAAUGUCUCGCACCUCGACGAUAAGCAAAAGUCAAAAUUUUGCAACUACCUGUUGGCUGUUGUCAACAUAUCAUUUGUCA
..(((((((((((....))).)))))...)))....(((((...((((((.......)))))).......(((((((....)))))))......))))). ( -20.70)
>DroYak_CAF1 14004 100 + 1
UUUGCACAUUUAUUUACGUAUAGUGUCUCGCACCUCGACGAUAAGCAAAAGUCAAAAUUUUGCAACUACCUGUUGGCUGUUGUCAACAUAUCAUUUGUCA
..(((((((((((....))).)))))...)))....(((((...((((((.......)))))).......(((((((....)))))))......))))). ( -20.80)
>DroAna_CAF1 13846 86 + 1
--------------CUCAUAUAAUAUCUCGCACCUCGACGAUAAGCAAAAGUCAAAAUUUUGCAACUGCCUGCUGGCUGUUGUCAACAUAUCAUUUGUCA
--------------......................(((((((.((((((.......))))))....(((....))))))))))................ ( -17.10)
>consensus
UCUGCACAUUUAUGCACGUAUAAUGUCUCGCACCUCGACGAUAAGCAAAAGUCAAAAUUUUGCAACUACCUGUUGGCUGUUGUCAACAUAUCAUUUGUCA
....................................(((((...((((((.......)))))).......(((((((....)))))))......))))). (-17.52 = -17.68 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:14 2006