Locus 2405

Sequence ID 3L_DroMel_CAF1
Location 6,766,600 – 6,766,693
Length 93
Max. P 0.514624
window3714

overview

Window 4

Location 6,766,600 – 6,766,693
Length 93
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 80.66
Mean single sequence MFE -47.43
Consensus MFE -26.66
Energy contribution -27.67
Covariance contribution 1.00
Combinations/Pair 1.32
Mean z-score -1.83
Structure conservation index 0.56
SVM decision value -0.04
SVM RNA-class probability 0.514624
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6766600 93 - 23771897
AUGCG---GAUCCGGCCGGCGAG---GCGGAACUGGGCGGCUGGAGUGGCAGGCCACUGUUGCUGCCGGCACCCGGUGACAAUUGGGAGUUGCUGCUGG
..(((---(.(((.(((.....)---))(..((((((..(((((((..((((....))))..)).))))).))))))..).....)))....))))... ( -46.00)
>DroVir_CAF1 41558 90 - 1
AUGCC---GAGC---CCGGCGAG---GCGGCGCUAGGCGGCUGCAGUGGCAGCCCGCUAUUGCUGCCCGCCCCGGGCGAAAGCUGGGAGCUGCUGCUGC
.((((---(...---.))))).(---((((((((.((((((.((((((((.....)))))))).).)))))((.(((....))).))))).)))))).. ( -53.30)
>DroGri_CAF1 38691 96 - 1
ACGCCGUCGAGC---CCGGCGACACGGCGCCGCCCGCCGGCUGCAACGUCAACCCACUGUUGCUGCCCGCUCCCGGCGAGAGUUGGGAGCUAUUGCUGC
.(((((......---.)))))....((((.....))))(((.(((((((......)).))))).))).(((((((((....)))))))))......... ( -44.90)
>DroSec_CAF1 27542 93 - 1
AUGCG---GAUCCGGCCGGAGAG---GCGGAGCUGGGCGGCUGGAGUGGCAGGCCACUGUUGCUGCCGGCACCCGGUGACAAUUGGGAAUUGCUGCUGG
..(((---(.(((.(((.....)---))(..((((((..(((((((..((((....))))..)).))))).))))))..).....)))....))))... ( -45.20)
>DroEre_CAF1 40701 93 - 1
AUGCG---GAUCCGGCCGGCGAG---GCCGAGCUGGGCGGCUGUAGCGGCAGUCCACUGUUGCUGCCGGCACCCGGUGACAGUUGCGAAUUGCUGCUGG
..(((---(..(((((((((...---)))).)))))((((((((((((((((....))))))))(((((...))))).))))))))......))))... ( -48.20)
>DroYak_CAF1 30607 93 - 1
AUGCG---GAUCCGGCCGGCGAG---GCGGAGCUGGGCGGCUGCAGCGGCAGGCCACUGUUGCUGCCGGCACCCGGUGACAGUUGGGAAUUGCUGCUGG
..(((---(.(((.(((.....)---))(..((((((.(.(.((((((((((....)))))))))).).).))))))..).....)))....))))... ( -47.00)
>consensus
AUGCG___GAUCCGGCCGGCGAG___GCGGAGCUGGGCGGCUGCAGCGGCAGGCCACUGUUGCUGCCGGCACCCGGUGACAGUUGGGAAUUGCUGCUGG
...............((((((..........((((((.(.(.((((((((((....)))))))))).).).))))))..((((.....)))).)))))) (-26.66 = -27.67 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:34 2006