Locus 2402

Sequence ID	3L_DroMel_CAF1
Location	6,754,847 – 6,754,942
Length	95
Max. P	0.999684

overview

Window 7

Location	6,754,847 – 6,754,942
Length	95
Sequences	6
Columns	95
Reading direction	forward
Mean pairwise identity	98.25
Mean single sequence MFE	-21.35
Consensus MFE	-20.17
Energy contribution	-20.50
Covariance contribution	0.33
Combinations/Pair	1.00
Mean z-score	-1.23
Structure conservation index	0.94
SVM decision value	1.15
SVM RNA-class probability	0.922751
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6754847 95 + 23771897
CAACUGCAAUGACGAUGACGACGUCGAUAAGGUCAUGAGCAAGUGUCAUUGCAGCGCAUAAAUUAUUUCAGGGGGUAAGGAUUGGAAAAUAAAUA
...((((((((((((((....))))(((...)))..........))))))))))..((....((((((....))))))....))........... ( -21.10)
>DroSec_CAF1 17814 95 + 1
CAACUGCAAUGACGAUGACGACGUCGAUAAGGUCAUGAGCAAGUGUCAUUGCAGCGCAUAAAUUAUUUCAGGGGGUAAGGAUUGGAAAAUAAAUA
...((((((((((((((....))))(((...)))..........))))))))))..((....((((((....))))))....))........... ( -21.10)
>DroSim_CAF1 18144 95 + 1
CAACUGCAAUGACGAUGACGACGUCGAUAAGGUCAUGAGCAAGUGUCAUUGCAGCGCAUAAAUUAUUUCAGGGGGUAAGGAUUGGAAAAUAAAUA
...((((((((((((((....))))(((...)))..........))))))))))..((....((((((....))))))....))........... ( -21.10)
>DroEre_CAF1 30726 95 + 1
CAACUGCAAUGACGAUGACGACGUCGAUAAGGUCAUGAGCAAGUGUCAUUGCAGCGCAUAAAUUAUUUCAGGGGGUAAGGAUUGGAAAAUAAAUA
...((((((((((((((....))))(((...)))..........))))))))))..((....((((((....))))))....))........... ( -21.10)
>DroYak_CAF1 20524 95 + 1
CAACUGCAAUGACGAUGACGACGUCGAUAAGGUCAUGAGCAAGUGUCAUUGCAGCGCAUAAAUUAUUUCAGGGGGUAAGGAUUGGUAAAUAAAUA
...((((((((((((((....))))(((...)))..........))))))))))..((....((((((....))))))....))........... ( -21.10)
>DroAna_CAF1 27303 95 + 1
CAACUGCAAUGACGAUGACGACGUCGAUAAGGUCAUGAGCAAGUGUCAUUGCAGCGCAUAAAUUAUGACAAGGGGUAAGGAUUGCAAAAUAAAUA
...((((((((((((((....))))(((...)))..........)))))))))).(((....((((........))))....))).......... ( -22.60)
>consensus
CAACUGCAAUGACGAUGACGACGUCGAUAAGGUCAUGAGCAAGUGUCAUUGCAGCGCAUAAAUUAUUUCAGGGGGUAAGGAUUGGAAAAUAAAUA
...((((((((((((((....))))(((...)))..........))))))))))..((....((((((....))))))....))........... (-20.17 = -20.50 +   0.33)

alignment

secondary structure

dotplot

Window 8

Location	6,754,847 – 6,754,942
Length	95
Sequences	6
Columns	95
Reading direction	reverse
Mean pairwise identity	98.25
Mean single sequence MFE	-18.81
Consensus MFE	-18.80
Energy contribution	-18.80
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-1.91
Structure conservation index	1.00
SVM decision value	3.88
SVM RNA-class probability	0.999684
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6754847 95 - 23771897
UAUUUAUUUUCCAAUCCUUACCCCCUGAAAUAAUUUAUGCGCUGCAAUGACACUUGCUCAUGACCUUAUCGACGUCGUCAUCGUCAUUGCAGUUG
........................................(((((((((((...((...(((((.........)))))))..))))))))))).. ( -18.80)
>DroSec_CAF1 17814 95 - 1
UAUUUAUUUUCCAAUCCUUACCCCCUGAAAUAAUUUAUGCGCUGCAAUGACACUUGCUCAUGACCUUAUCGACGUCGUCAUCGUCAUUGCAGUUG
........................................(((((((((((...((...(((((.........)))))))..))))))))))).. ( -18.80)
>DroSim_CAF1 18144 95 - 1
UAUUUAUUUUCCAAUCCUUACCCCCUGAAAUAAUUUAUGCGCUGCAAUGACACUUGCUCAUGACCUUAUCGACGUCGUCAUCGUCAUUGCAGUUG
........................................(((((((((((...((...(((((.........)))))))..))))))))))).. ( -18.80)
>DroEre_CAF1 30726 95 - 1
UAUUUAUUUUCCAAUCCUUACCCCCUGAAAUAAUUUAUGCGCUGCAAUGACACUUGCUCAUGACCUUAUCGACGUCGUCAUCGUCAUUGCAGUUG
........................................(((((((((((...((...(((((.........)))))))..))))))))))).. ( -18.80)
>DroYak_CAF1 20524 95 - 1
UAUUUAUUUACCAAUCCUUACCCCCUGAAAUAAUUUAUGCGCUGCAAUGACACUUGCUCAUGACCUUAUCGACGUCGUCAUCGUCAUUGCAGUUG
........................................(((((((((((...((...(((((.........)))))))..))))))))))).. ( -18.80)
>DroAna_CAF1 27303 95 - 1
UAUUUAUUUUGCAAUCCUUACCCCUUGUCAUAAUUUAUGCGCUGCAAUGACACUUGCUCAUGACCUUAUCGACGUCGUCAUCGUCAUUGCAGUUG
..........(((........................)))(((((((((((...((...(((((.........)))))))..))))))))))).. ( -18.86)
>consensus
UAUUUAUUUUCCAAUCCUUACCCCCUGAAAUAAUUUAUGCGCUGCAAUGACACUUGCUCAUGACCUUAUCGACGUCGUCAUCGUCAUUGCAGUUG
........................................(((((((((((...((...(((((.........)))))))..))))))))))).. (-18.80 = -18.80 +   0.00)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:28 2006