| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,753,503 – 6,753,605 |
| Length | 102 |
| Max. P | 0.807203 |
| Location | 6,753,503 – 6,753,605 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.52 |
| Mean single sequence MFE | -21.75 |
| Consensus MFE | -15.31 |
| Energy contribution | -15.50 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.807203 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6753503 102 + 23771897 C---------------AUACGAGUGAAUAA-U-UUCCAGCGUGUGUGUGUGUCUUAGGCGCUUAAAGCUUUUUAAGGGUUUUUAAGAUUUUUAUCUAACA-AACUCGCUGUGCAUACUUA (---------------(((((...(((...-.-)))...)))))).((((((....(((((.....)).......((((((.(.((((....)))).).)-))))))))..))))))... ( -25.50) >DroVir_CAF1 28385 88 + 1 C---------------UCA-GUGUG-----------UUG----UGCGUGUGUCUUAGGCGCUUAAAGCUUUUUAAGGGUUUUUAAGAUUUUUAUCUAACA-AACUCGCUGUGCAUACUUA .---------------..(-(((((-----------(..----.(((.(((((((((((.((((((....)))))).))..)))))))............-.)).)))...))))))).. ( -21.41) >DroGri_CAF1 25749 99 + 1 C---------------UUA-GCUUGGAUAAAUGUUGCUG----UAUGUGUGUCUUAGGCGCUUAAAGCUUUUUAAGGGUUUUUAAGAUUUUUAUCUAACA-GACUCGCUGUGCAUACUUA .---------------.((-((.............))))----...((((((....(((((.....)).......((((((.(.((((....)))).).)-))))))))..))))))... ( -20.02) >DroMoj_CAF1 28415 93 + 1 U---------------UCA-GUUUG------CGUAUUUG----UGUCUGUGUCUUAGGCGCUUAAAGCUUUUUAAGGGUUUUUAAGAUUUUUAUCUAACA-AACUCGCUGUGCAUACUUA .---------------..(-((.((------((.....(----((((((.....)))))))..............((((((.(.((((....)))).).)-)))))....)))).))).. ( -19.90) >DroAna_CAF1 25900 111 + 1 CGAAAACAAAUCCCCCAU-CAGGUAAAUAU-U-CUCC-G----UGGAUGUGUGUUAGGCGCUUAAAGCUUUUUAAGGGUUUUUAAGAUUUUUAUCUAACA-AACUCGCUGUGCAUACUUA ..............((((-..((.......-.-))..-)----)))..((((((..(((((.....)).......((((((.(.((((....)))).).)-))))))))..))))))... ( -22.40) >DroPer_CAF1 21551 94 + 1 C---------------CUGCA---GAGUCU-U-UUC--C----UCUGUGUGUCUUAGGCGCUUAAAGCUUUUUAAGGGUUUUUAAGAUUUUUAUCUAACAAAACUCGCUGUGCAUACUUA .---------------..(((---(((...-.-...--)----)))))(((((...(((((.....)).......(((((((..((((....))))...))))))))))..).))))... ( -21.30) >consensus C_______________UUA_GUGUGAAUA__U_UUCCUG____UGUGUGUGUCUUAGGCGCUUAAAGCUUUUUAAGGGUUUUUAAGAUUUUUAUCUAACA_AACUCGCUGUGCAUACUUA ..............................................((((((....(((((.....)).......(((((....((((....)))).....))))))))..))))))... (-15.31 = -15.50 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:22 2006