| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,752,195 – 6,752,291 |
| Length | 96 |
| Max. P | 0.942459 |
| Location | 6,752,195 – 6,752,291 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 93.15 |
| Mean single sequence MFE | -14.31 |
| Consensus MFE | -13.33 |
| Energy contribution | -13.83 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.942459 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6752195 96 - 23771897 AAAACGAAAAUUUCACUGAAUUUUCAAUGCGACAACCGAUUUCCUCAAUCAAAACGAAGACAUUGAAAAUUAAGUCCCCUGCCCACGAC---CGCCU-UC ..............(((.((((((((((((.......((((.....))))........).))))))))))).)))..............---.....-.. ( -11.96) >DroSec_CAF1 15131 96 - 1 AAAACGAAAAUUUCACUGAAUUUUCAAUGCGACAACCGAUUUCCUCAAUCAAAACGAAGGCAUUGAAAAUUAAGUCCCCCGCCCACGAC---UGCCU-CC ..............(((.(((((((((((((.....)((((.....)))).........)))))))))))).)))..............---.....-.. ( -15.10) >DroSim_CAF1 15297 96 - 1 AAAACGAAAAUUUCACUGAAUUUUCAAUGCGACAACCGAUUUCCUCAAUCAAAACGAAGGCAUUGAAAAUUAAGUCCCCCGCCCACGAC---CGCCU-CC ..............(((.(((((((((((((.....)((((.....)))).........)))))))))))).)))..............---.....-.. ( -15.10) >DroEre_CAF1 27945 96 - 1 AAAACGAAAAUUUCACUGAAUUUUCAAUGCGACAACCGAUUUCCUCAAUCAAAACGAAGGCAUUGAAAAUUAAGUCCCCCGCCCACCAC---CGACU-CC ..............(((.(((((((((((((.....)((((.....)))).........)))))))))))).)))..............---.....-.. ( -15.10) >DroYak_CAF1 17767 99 - 1 AAAACGAAAAUUUCACUGAAUUUUCAAUGCGACAACCGAUUUCCUCAAUCAAAACGAAGGCAUUGAAAAUUAAGUCCCCCGCCCACCACCGCCGACU-CG ....(((.......(((.(((((((((((((.....)((((.....)))).........)))))))))))).))).....((........))....)-)) ( -16.00) >DroAna_CAF1 24534 97 - 1 AAUUCGAAAAUUUCACUGAAUUUUCAAUGCGACAACCGAUUUCCUCAAUCAAAACGAAGGCAUUGAAAACGAAGUCCCCCACCCACCCA---CGUCUGCC .....((((((((....))))))))...(((((....((((.....))))........(((.(((....))).))).............---.))).)). ( -12.60) >consensus AAAACGAAAAUUUCACUGAAUUUUCAAUGCGACAACCGAUUUCCUCAAUCAAAACGAAGGCAUUGAAAAUUAAGUCCCCCGCCCACCAC___CGCCU_CC ..............(((.(((((((((((((.....)((((.....)))).........)))))))))))).)))......................... (-13.33 = -13.83 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:21 2006