Locus 2397

Sequence ID 3L_DroMel_CAF1
Location 6,744,940 – 6,745,034
Length 94
Max. P 0.551059
window3697

overview

Window 7

Location 6,744,940 – 6,745,034
Length 94
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 92.47
Mean single sequence MFE -30.20
Consensus MFE -25.12
Energy contribution -25.52
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.30
Structure conservation index 0.83
SVM decision value 0.03
SVM RNA-class probability 0.551059
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6744940 94 - 23771897
AUCGCGUAACACGGUAGUUGGGCCAACUUAGGGCUCCUCGGCUGCCCUCCGUUUCU--------------GUUUCAGUUUCUGAUUCUGAUUCCAGUGGCAUGCAGCU
...((((..(((((((((((((((.......)))))...)))))))....(..((.--------------(..((((...))))..).))..)..)))..)))).... ( -28.80)
>DroSec_CAF1 8049 94 - 1
AUCGCGUAACACGGUAGUUGGGCCAACUUAGGGCUCCUCGGCUGCCCUCCGUUUCU--------------GUUUCAGUUUCUGAUUCUGAUUCCAGUGGCAUGCAGCU
...((((..(((((((((((((((.......)))))...)))))))....(..((.--------------(..((((...))))..).))..)..)))..)))).... ( -28.80)
>DroSim_CAF1 8208 94 - 1
AUCGCGUAACACGGUAGUUGGGCCAACUUAGGGCUCCUCGGCUGCCCUCCGUUUCU--------------GUUUCAGUUUCUGAUUCUGAUUCCAGUGGCAUGCAGCU
...((((..(((((((((((((((.......)))))...)))))))....(..((.--------------(..((((...))))..).))..)..)))..)))).... ( -28.80)
>DroEre_CAF1 20467 94 - 1
AUCGCGUAACACGGUAGUUGGGCCAACUUAGGGCUCCUCGGCUGCCCUCAGUUGCU--------------GUUUCAGUUUCUGAUUCUGAUUCCAGUGGCAUGCAGCU
...((((..(((((((((((((((.......)))))...))))))).((((..(((--------------(...))))..))))...........)))..)))).... ( -32.30)
>DroYak_CAF1 10194 108 - 1
AUCGCGUAACACGGUAGUUGGGCCAACUUAGGGCUCCUCGGCUGCCCUCUGUUUCUGUGUUUCAGUUUCAGUUUAAGUUUCUGAUUCUGAUUCCACUGGCAUGCAGCU
...((((..((.((((((((((((.......)))))...)))))))..........(((..((((..((((.........))))..))))...)))))..)))).... ( -32.30)
>consensus
AUCGCGUAACACGGUAGUUGGGCCAACUUAGGGCUCCUCGGCUGCCCUCCGUUUCU______________GUUUCAGUUUCUGAUUCUGAUUCCAGUGGCAUGCAGCU
...((((..(((((((((((((((.......)))))...)))))))........................(..((((.........))))..)..)))..)))).... (-25.12 = -25.52 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:18 2006