Locus 2396

Sequence ID 3L_DroMel_CAF1
Location 6,740,649 – 6,740,743
Length 94
Max. P 0.970645
window3696

overview

Window 6

Location 6,740,649 – 6,740,743
Length 94
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 89.54
Mean single sequence MFE -39.80
Consensus MFE -31.36
Energy contribution -31.25
Covariance contribution -0.11
Combinations/Pair 1.23
Mean z-score -3.90
Structure conservation index 0.79
SVM decision value 1.66
SVM RNA-class probability 0.970645
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6740649 94 - 23771897
GGGUAAGAAACUAUUCCUC---GCUCGAGAGGGCGACUCAAUUAUGAGGAAUGGUUUUUGGUUUCGGGCUCCUAAGCCCGAGCACUGCCGCAAACAU
.(((.((((((((((((((---((((....)))))).(((....)))))))))))))))(((((((((((....)))))))).))))))........ ( -41.70)
>DroSec_CAF1 3708 94 - 1
GGGUGAGAAACUAUUCCUC---GCUCGAGAGGGCGACUCAAUUAUGAGGAAUGGUUUUUGGUUUCGGGCUCCUAAGCCCGAGCCCUGCCGCAAACAU
.(((.((((((((((((((---((((....)))))).(((....)))))))))))))))((.((((((((....)))))))).)).)))........ ( -43.00)
>DroSim_CAF1 3840 94 - 1
GGGUAAGAAACUAUUCCUC---GCUCGAGAGGGCGACUCAAUUAUGAGGAAUGGUUCUUGGUUUCGGGCUCCUAAGCCCGAGCCCUGCCGCAAACAU
.((((((((.(((((((((---((((....)))))).(((....)))))))))))))))((.((((((((....)))))))).)).)))........ ( -41.60)
>DroEre_CAF1 16120 94 - 1
GGGUGAGAAACUAUUCCUC---GCUCGUGAGGGCGACUCAAUUAUGAGGAAUGGUUUUUGGUUUUGGGCUCCUAAGCCCGAGCACUGCCGCAAACAU
.(((.((((((((((((((---((((....)))))).(((....)))))))))))))))(((((((((((....)))))))).))))))........ ( -40.70)
>DroYak_CAF1 5720 94 - 1
GGGUAAGAAACUAUUCCUC---GCUCGUGAGGGCGACUCAAUUAUGAGGAAUGGUUUCUGGUUUUGGGUUCCUAAGCCCGAGCACUGCCGCAAACAU
.(((.((((((((((((((---((((....)))))).(((....)))))))))))))))((((((((((......))))))).))))))........ ( -40.80)
>DroAna_CAF1 11283 96 - 1
GAGGAGGAGCCUUUUCAUUUCGGGUUGAGGGGGCGACUCAAUUAUGAGGAAUGGUUUCUGGUUUCGGG-UCCUAAGCUCGACUACUGCCACAAGCAU
...(((..(((((((((........)))))))))..)))..............((((.((((.(((((-(.....)))))).....)))).)))).. ( -31.00)
>consensus
GGGUAAGAAACUAUUCCUC___GCUCGAGAGGGCGACUCAAUUAUGAGGAAUGGUUUUUGGUUUCGGGCUCCUAAGCCCGAGCACUGCCGCAAACAU
.....(((((((((((......((((....))))..((((....)))))))))))))))(((((((((((....))))))))....)))........ (-31.36 = -31.25 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:17 2006